After finding my reading-glasses, I sat down to read the cgpsa
documentation, as well as the Communigate docs.

And, found the problem.  Nothing to do with SA's cf files (which all
were --lint-ing correctly), but rather with the "cgpsa" perl script.

It seems it has two modes:
(1) "header-only", where the script circumvents the PIPE mechanism,
writing its own headers, and
(2) "full", where the SA functionality is not tampered with, and
headers are touched/written ONLY by SA.

The server *was* running in mode (1), now it's running in mode (2).

So far, no more MISSING_ or EMTPY_ scores of any kind.

I'll wait and see a bit ... but, looks like letting SA do its thing is
all that was required.

Thanks for the comments.

(off to have YA-chat w/ 'Billy' ...)

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