Another idiot question... Is there a Pack or Easy build recipe for this
software?
Should help you get it built.

On Wed, 26 Jul 2023, 10:27 Aziz Ogutlu via users, <users@lists.open-mpi.org>
wrote:

> Hi Howard,
>
> I'm using with salloc+mpirun command that explained on faq page that you
> send, this time I'm getting error below:
>
> Caught signal 11 (Segmentation fault: address not mapped to object at
> address 0x30)
> On 7/25/23 19:34, Pritchard Jr., Howard wrote:
>
> HI Aziz,
>
>
>
> Oh I see you referenced the faq.  That section of the faq is discussing
> how to make the Open MPI 4 series (and older)  job launcher “know” about
> the batch scheduler you are using.
>
> The relevant section for launching with srun is covered by this faq -
> https://www-lb.open-mpi.org/faq/?category=slurm
>
>
>
> Howard
>
>
>
> *From: *"Pritchard Jr., Howard" <howa...@lanl.gov> <howa...@lanl.gov>
> *Date: *Tuesday, July 25, 2023 at 8:26 AM
> *To: *Open MPI Users <users@lists.open-mpi.org> <users@lists.open-mpi.org>
> *Cc: *Aziz Ogutlu <aziz.ogu...@eduline.com.tr>
> <aziz.ogu...@eduline.com.tr>
> *Subject: *Re: [EXTERNAL] Re: [OMPI users] MPI_Init_thread error
>
>
>
> HI Aziz,
>
>
>
> Did you include –with-pmi2 on your Open MPI configure line?
>
>
>
> Howard
>
>
>
> *From: *users <users-boun...@lists.open-mpi.org>
> <users-boun...@lists.open-mpi.org> on behalf of Aziz Ogutlu via users
> <users@lists.open-mpi.org> <users@lists.open-mpi.org>
> *Organization: *Eduline Bilisim
> *Reply-To: *Open MPI Users <users@lists.open-mpi.org>
> <users@lists.open-mpi.org>
> *Date: *Tuesday, July 25, 2023 at 8:18 AM
> *To: *Open MPI Users <users@lists.open-mpi.org> <users@lists.open-mpi.org>
> *Cc: *Aziz Ogutlu <aziz.ogu...@eduline.com.tr>
> <aziz.ogu...@eduline.com.tr>
> *Subject: *[EXTERNAL] Re: [OMPI users] MPI_Init_thread error
>
>
>
> Hi Gilles,
>
> Thank you for your response.
>
> When I run srun --mpi=list, I get only pmi2.
>
> When I run command with --mpi=pmi2 parameter, I got same error.
>
> OpenMPI automatically support slurm after 4.x version.
> https://www.open-mpi.org/faq/?category=building#build-rte
> <https://urldefense.com/v3/__https:/www.open-mpi.org/faq/?category=building*build-rte__;Iw!!Bt8fGhp8LhKGRg!DNaoJu7zrmKRHUF76zzyFXi9n2Bq8K8Ud-yvTEIkUYtxz_1_2DFwrZAKofSbiBD1rhLyttDpQVrl12eaQ2CN$>
>
>
>
> On 7/25/23 12:55, Gilles Gouaillardet via users wrote:
>
> Aziz,
>
>
>
> When using direct run (e.g. srun), OpenMPI has to interact with SLURM.
>
> This is typically achieved via PMI2 or PMIx
>
>
>
> You can
>
> srun --mpi=list
>
> to list the available options on your system
>
>
>
> if PMIx is available, you can
>
> srun --mpi=pmix ...
>
>
>
> if only PMI2 is available, you need to make sure Open MPI was built with
> SLURM support (e.g. configure --with-slurm ...)
>
> and then
>
> srun --mpi=pmi2 ...
>
>
>
>
>
> Cheers,
>
>
>
> Gilles
>
>
>
> On Tue, Jul 25, 2023 at 5:07 PM Aziz Ogutlu via users <
> users@lists.open-mpi.org> wrote:
>
> Hi there all,
>
> We're using Slurm 21.08 on Redhat 7.9 HPC cluster with OpenMPI 4.0.3 + gcc
> 8.5.0.
>
> When we run command below for call SU2, we get an error message:
>
>
>
> *$ srun -p defq --nodes=1 --ntasks-per-node=1 --time=01:00:00 --pty bash
> -i*
>
> *$ module load su2/7.5.1*
>
> *$ SU2_CFD config.cfg*
>
>
>
> **** An error occurred in MPI_Init_thread*
>
> **** on a NULL communicator*
>
> **** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,*
>
> ****    and potentially your MPI job)*
>
> *[cnode003.hpc:17534] Local abort before MPI_INIT completed completed
> successfully, but am not able to aggregate error messages, and not able to
> guarantee that all other processes were killed!*
>
> --
>
> Best regards,
>
> Aziz Öğütlü
>
>
>
> Eduline Bilişim Sanayi ve Ticaret Ltd. Şti.  www.eduline.com.tr 
> <https://urldefense.com/v3/__http:/www.eduline.com.tr__;!!Bt8fGhp8LhKGRg!DNaoJu7zrmKRHUF76zzyFXi9n2Bq8K8Ud-yvTEIkUYtxz_1_2DFwrZAKofSbiBD1rhLyttDpQVrl1wUXbUrh$>
>
> Merkez Mah. Ayazma Cad. No:37 Papirus Plaza
>
> Kat:6 Ofis No:118 Kağıthane -  İstanbul - Türkiye 34406
>
> Tel : +90 212 324 60 61     Cep: +90 541 350 40 72
>
> --
>
> İyi çalışmalar,
>
> Aziz Öğütlü
>
>
>
> Eduline Bilişim Sanayi ve Ticaret Ltd. Şti.  www.eduline.com.tr 
> <https://urldefense.com/v3/__http:/www.eduline.com.tr__;!!Bt8fGhp8LhKGRg!DNaoJu7zrmKRHUF76zzyFXi9n2Bq8K8Ud-yvTEIkUYtxz_1_2DFwrZAKofSbiBD1rhLyttDpQVrl1wUXbUrh$>
>
> Merkez Mah. Ayazma Cad. No:37 Papirus Plaza
>
> Kat:6 Ofis No:118 Kağıthane -  İstanbul - Türkiye 34406
>
> Tel : +90 212 324 60 61     Cep: +90 541 350 40 72
>
> --
> İyi çalışmalar,
> Aziz Öğütlü
>
> Eduline Bilişim Sanayi ve Ticaret Ltd. Şti.  www.eduline.com.tr
> Merkez Mah. Ayazma Cad. No:37 Papirus Plaza
> Kat:6 Ofis No:118 Kağıthane -  İstanbul - Türkiye 34406
> Tel : +90 212 324 60 61     Cep: +90 541 350 40 72
>
>

Reply via email to