Thanks, supposedly Liqid sent a fix install, we will see, especially when I
start linpack on this HPC.
Ben Duncan - Business Network Solutions, Inc. 336 Elton Road Jackson MS, 39212
"Never attribute to malice, that which can be adequately explained by stupidity"
- Hanlon's Razor
________________________________________
From: users <users-boun...@lists.open-mpi.org> on behalf of Prentice Bisbal via
users <users@lists.open-mpi.org>
Sent: Tuesday, March 30, 2021 4:40 PM
To: users@lists.open-mpi.org
Cc: Prentice Bisbal
Subject: Re: [OMPI users] [External] Re: Newbie With Issues
That error message is right in your original post, and I didn't even see
it:
> configure:6541: icc -O2 conftest.c >&5
> ld: cannot find -lstdc++
Well, that's an easy fix.
I guess my eyes stopped when I got to this:
> configure: error: C compiler cannot create executables See `config.log' for
> more details
You can ignore my message about /tmp being mounted noexec. ;)
Prentice
On 3/30/21 1:04 PM, bend linux4ms.net via users wrote:
> I think I have found one of the issues. I took the check c program from
> openmpi
> and tried to compile and got the following:
>
> [root@jean-r8-sch24 benchmarks]# icc dummy.c
> ld: cannot find -lstdc++
> [root@jean-r8-sch24 benchmarks]# cat dummy.c
> int
> main ()
> {
>
> ;
> return 0;
> }
> [root@jean-r8-sch24 benchmarks]#
>
> Ben Duncan - Business Network Solutions, Inc. 336 Elton Road Jackson MS, 39212
> "Never attribute to malice, that which can be adequately explained by
> stupidity"
> - Hanlon's Razor
>
>
>
>
> ________________________________________
> From: users <users-boun...@lists.open-mpi.org> on behalf of bend linux4ms.net
> via users <users@lists.open-mpi.org>
> Sent: Tuesday, March 30, 2021 12:00 PM
> To: Open MPI Users
> Cc: bend linux4ms.net
> Subject: Re: [OMPI users] Newbie With Issues
>
> Thanks Mr Heinz for responding.
>
> It maybe the case with clang, but doing a intel setvars.sh then issuing the
> following
> compile gives me the message:
>
> [root@jean-r8-sch24 openmpi-4.1.0]# icc
> icc: command line error: no files specified; for help type "icc -help"
> [root@jean-r8-sch24 openmpi-4.1.0]# icc -v
> icc version 2021.1 (gcc version 8.3.1 compatibility)
> [root@jean-r8-sch24 openmpi-4.1.0]#
>
> Would lead me to believe that icc is still available to use.
>
> This is a government contract and they want the latest and greatest.
>
> Ben Duncan - Business Network Solutions, Inc. 336 Elton Road Jackson MS, 39212
> "Never attribute to malice, that which can be adequately explained by
> stupidity"
> - Hanlon's Razor
>
>
>
>
> ________________________________________
> From: Heinz, Michael William <michael.william.he...@cornelisnetworks.com>
> Sent: Tuesday, March 30, 2021 11:52 AM
> To: Open MPI Users
> Cc: bend linux4ms.net
> Subject: RE: Newbie With Issues
>
> It looks like you're trying to build Open MPI with the Intel C compiler. TBH
> - I think that icc isn't included with the latest release of oneAPI, I think
> they've switched to including clang instead. I had a similar issue to yours
> but I resolved it by installing a 2020 version of the Intel HPC software.
> Unfortunately, those versions require purchasing a license.
>
> -----Original Message-----
> From: users <users-boun...@lists.open-mpi.org> On Behalf Of bend linux4ms.net
> via users
> Sent: Tuesday, March 30, 2021 12:42 PM
> To: Open MPI Open MPI <users@lists.open-mpi.org>
> Cc: bend linux4ms.net <b...@linux4ms.net>
> Subject: [OMPI users] Newbie With Issues
>
> Hello group, My name is Ben Duncan. I have been tasked with installing
> openMPI and Intel compiler on a HPC systems. I am new to the the whole HPC
> and MPI environment so be patient with me.
>
> I have successfully gotten the Intel compiler (oneapi version from
> l_HPCKit_p_2021.1.0.2684_offline.sh installed without any errors.
>
> I am trying to install and configure the openMPI version 4.1.0 however trying
> to run configuration for openmpi gives me the following error:
>
> ============================================================================
> == Configuring Open MPI
> ============================================================================
>
> *** Startup tests
> checking build system type... x86_64-unknown-linux-gnu checking host system
> type... x86_64-unknown-linux-gnu checking target system type...
> x86_64-unknown-linux-gnu checking for gcc... icc checking whether the C
> compiler works... no
> configure: error: in `/p/app/openmpi-4.1.0':
> configure: error: C compiler cannot create executables See `config.log' for
> more details
>
> With the error in config.log being:
>
> configure:6499: $? = 0
> configure:6488: icc -qversion >&5
> icc: command line warning #10006: ignoring unknown option '-qversion'
> icc: command line error: no files specified; for help type "icc -help"
> configure:6499: $? = 1
> configure:6519: checking whether the C compiler works
> configure:6541: icc -O2 conftest.c >&5
> ld: cannot find -lstdc++
> configure:6545: $? = 1
> configure:6583: result: no
> configure: failed program was:
> | /* confdefs.h */
> | #define PACKAGE_NAME "Open MPI"
> | #define PACKAGE_TARNAME "openmpi"
> | #define PACKAGE_VERSION "4.1.0"
> | #define PACKAGE_STRING "Open MPI 4.1.0"
> | #define PACKAGE_BUGREPORT
> "https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.open-mpi.org%2Fcommunity%2Fhelp%2F&data=04%7C01%7Cmichael.william.heinz%40cornelisnetworks.com%7C452071550e3c40842a6008d8f39b1ab4%7C4dbdb7da74ee4b458747ef5ce5ebe68a%7C0%7C0%7C637527194795401887%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=MqdORKp%2Fbf6mS7NQ51RjPUe0WVVcBITwP0HpxpYyBjI%3D&reserved=0";
> | #define PACKAGE_URL ""
> | #define OPAL_ARCH "x86_64-unknown-linux-gnu"
> | /* end confdefs.h. */
> |
> | int
> | main ()
> | {
> |
> | ;
> | return 0;
> | }
> configure:6588: error: in `/p/app/openmpi-4.1.0':
> configure:6590: error: C compiler cannot create executables See `config.log'
> for more details
>
>
>
> My configure line looks like:
>
> ./configure --prefix=/p/app/compilers/openmpi-4.1.0/openmpi-4.1.0.intel
> --enable-wrapper-rpath --disable-libompitrace
> --enable-mpirun-prefix-by-default --enable-mpi-fortran
>
> SO what am I doing wrong , or is it something else ?
>
> Thanks
>
>
> Ben Duncan - Business Network Solutions, Inc. 336 Elton Road Jackson MS,
> 39212 "Never attribute to malice, that which can be adequately explained by
> stupidity"
> - Hanlon's Razor
>
>
