Hi Jeff - do you remember this issue from a couple of months ago?
Unfortunately, the failure to find pmi.h is still happening. I just tried with
4.0.1 (not rc), and I still run into the same error (failing to find #include
<pmi.h> when compiling opal/mca/pmix/s1/mca_pmix_s1_la-pmix_s1.lo):
make[2]: Entering directory
`/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal/mca/pmix/s1'
CC mca_pmix_s1_la-pmix_s1.lo
pmix_s1.c:29:17: fatal error: pmi.h: No such file or directory
#include <pmi.h>
^
compilation terminated.
make[2]: *** [mca_pmix_s1_la-pmix_s1.lo] Error 1
make[2]: Leaving directory
`/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal/mca/pmix/s1'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal'
make: *** [all-recursive] Error 1
When I dig into what libtool is trying to do, I get (once I remove the —silent
flag):
[bernadm@tin s1]$ /bin/sh ../../../../libtool --tag=CC --mode=compile gcc
-std=gnu99 -std=gnu99 -DHAVE_CONFIG_H -I. -I../../../../opal/include
-I../../../../ompi/include -I../../../../oshmem/include
-I../../../../opal/mca/hwloc/hwloc201/hwloc/include/private/autogen
-I../../../../opal/mca/hwloc/hwloc201/hwloc/include/hwloc/autogen
-I../../../../ompi/mpiext/cuda/c -I../../../.. -I../../../../orte/include
-I/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal/mca/event/libevent2022/libevent
-I/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal/mca/event/libevent2022/libevent/include
-I/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal/mca/hwloc/hwloc201/hwloc/include
-O3 -DNDEBUG -finline-functions -fno-strict-aliasing -mcx16 -pthread -MT
mca_pmix_s1_la-pmix_s1.lo -MD -MP -MF .deps/mca_pmix_s1_la-pmix_s1.Tpo -c -o
mca_pmix_s1_la-pmix_s1.lo pmix_s1.c
libtool: compile: gcc -std=gnu99 -std=gnu99 -DHAVE_CONFIG_H -I.
-I../../../../opal/include -I../../../../ompi/include
-I../../../../oshmem/include
-I../../../../opal/mca/hwloc/hwloc201/hwloc/include/private/autogen
-I../../../../opal/mca/hwloc/hwloc201/hwloc/include/hwloc/autogen
-I../../../../ompi/mpiext/cuda/c -I../../../.. -I../../../../orte/include
-I/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal/mca/event/libevent2022/libevent
-I/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal/mca/event/libevent2022/libevent/include
-I/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1/opal/mca/hwloc/hwloc201/hwloc/include
-O3 -DNDEBUG -finline-functions -fno-strict-aliasing -mcx16 -pthread -MT
mca_pmix_s1_la-pmix_s1.lo -MD -MP -MF .deps/mca_pmix_s1_la-pmix_s1.Tpo -c
pmix_s1.c -fPIC -DPIC -o .libs/mca_pmix_s1_la-pmix_s1.o
and indeed there’s no sign of -I/usr/include/slurm passed into gcc.
thanks,
Noam
> On Mar 23, 2019, at 10:07 AM, Noam Bernstein <noam.bernst...@nrl.navy.mil>
> wrote:
>
> Sadly, doesn't seem to be helping. From config.log:
> It was created by Open MPI configure 4.0.1rc3, which was
> generated by GNU Autoconf 2.69. Invocation command line was
>
> $ ./configure --with-verbs --with-ofi --with-pmix
> --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr/lib64
> --prefix=/share/apps/mpi/openmpi/4.0.1rc3/ib/gnu
>
> and compilation:
> $ make
> .
> .
> .
> make[2]: Entering directory
> `/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1rc3/opal/mca/pmix/s1'
> CC mca_pmix_s1_la-pmix_s1.lo
> pmix_s1.c:29:17: fatal error: pmi.h: No such file or directory
> #include <pmi.h>
> ^
> compilation terminated.
> make[2]: *** [mca_pmix_s1_la-pmix_s1.lo] Error 1
> make[2]: Leaving directory
> `/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1rc3/opal/mca/pmix/s1'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory
> `/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.1rc3/opal'
> make: *** [all-recursive] Error 1
>
>
____________
||
|U.S. NAVAL|
|_RESEARCH_|
LABORATORY
Noam Bernstein, Ph.D.
Center for Materials Physics and Technology
U.S. Naval Research Laboratory
T +1 202 404 8628 F +1 202 404 7546
https://www.nrl.navy.mil <https://www.nrl.navy.mil/>
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