Hi Gilles,
everything works as expected with gcc and icc. I don't know how to set the
stackize to unlimited (I'm using tcsh), but I still get the error if I set
it to 1 GB.
loki java 121 limit stacksize 1024m
loki java 122 mpiexec -np 4 --host loki:4 java
MatMultWithAnyProc2DarrayIn1DarrayMain
Error: in routine alloca() there is a
stack overflow: thread 0, max 1048564KB, used 0KB, request 42B
Error: in routine alloca() there is a
stack overflow: thread 0, max 1048564KB, used 0KB, request 42B
Error: in routine alloca() there is a
stack overflow: thread 0, max 1048564KB, used 0KB, request 42B
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
Error: in routine alloca() there is a
stack overflow: thread 0, max 1048564KB, used 0KB, request 42B
--------------------------------------------------------------------------
mpiexec detected that one or more processes exited with non-zero status, thus
causing
the job to be terminated. The first process to do so was:
Process name: [[52584,1],0]
Exit code: 127
--------------------------------------------------------------------------
loki java 123
Kind regards
Siegmar
On 3/26/19 10:36 AM, Gilles Gouaillardet wrote:
Siegmar,
Is this issue specific to the PGI compiler ?
What if you
ulimit -s
before invoking mpirun, is that good enough to workaround the problem ?
Cheers,
Gilles
On Tue, Mar 26, 2019 at 6:32 PM Siegmar Gross
<siegmar.gr...@informatik.hs-fulda.de> wrote:
Hi,
I've installed openmpi-v4.0.x-201903220241-97aa434 and
openmpi-master-201903260242-dfbc144 on my "SUSE Linux Enterprise Server 12.3
(x86_64)" with pgcc-18.4. Unfortunately, I still get the following error for
my Java programs for openmpi-master. Everything works as expected for
openmpi-4.0.x. I've already reported the error some time ago.
https://users.open-mpi.narkive.com/qz90agAO/ompi-users-stack-overflow-in-routine-alloca-for-java-programs-in-openmpi-master-with-pgcc-18-4
loki java 127 ompi_info | grep "Configure command line:"
Configure command line: '--prefix=/usr/local/openmpi-master_64_pgcc'
'--libdir=/usr/local/openmpi-master_64_pgcc/lib64'
'--with-jdk-bindir=/usr/local/jdk-11/bin'
'--with-jdk-headers=/usr/local/jdk-11/include' 'JAVA_HOME=/usr/local/jdk-11'
'LDFLAGS=-m64 -Wl,-z -Wl,noexecstack -L/usr/local/pgi/linux86-64/18.4/lib
-R/usr/local/pgi/linux86-64/18.4/lib' 'LIBS=-lpgm' 'CC=pgcc' 'CXX=pgc++'
'FC=pgfortran' 'CFLAGS=-c11 -m64' 'CXXFLAGS=-m64' 'FCFLAGS=-m64' 'CPP=cpp'
'CXXCPP=cpp' '--enable-mpi-cxx' '--enable-cxx-exceptions' '--enable-mpi-java'
'--with-valgrind=/usr/local/valgrind' '--with-hwloc=internal' '--without-verbs'
'--with-wrapper-cflags=-c11 -m64' '--with-wrapper-cxxflags=-m64'
'--with-wrapper-fcflags=-m64' '--enable-debug'
loki java 128 mpiexec -np 4 --host loki:4 java
MatMultWithAnyProc2DarrayIn1DarrayMain
Error: in routine alloca() there is a
stack overflow: thread 0, max 8180KB, used 0KB, request 42B
Error: in routine alloca() there is a
stack overflow: thread 0, max 8180KB, used 0KB, request 42B
Error: in routine alloca() there is a
stack overflow: thread 0, max 8180KB, used 0KB, request 42B
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpiexec detected that one or more processes exited with non-zero status, thus
causing
the job to be terminated. The first process to do so was:
Process name: [[44592,1],1]
Exit code: 127
--------------------------------------------------------------------------
loki java 129
I would be grateful, if somebody can fix the problem. Do you need anything
else? Thank you very much for any help in advance.
Kind regards
Siegmar
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