Patrick -- You might want to update your HDF code to not use MPI_LB and MPI_UB -- these constants were deprecated in MPI-2.1 in 2009 (an equivalent function, MPI_TYPE_CREATE_RESIZED was added in MPI-2.0 in 1997), and were removed from the MPI-3.0 standard in 2012.
Meaning: the death of these constants has been written on the wall since 2009. That being said, Open MPI v4.0 did not remove these constants -- we just *disabled them by default*, specifically for cases like this. I.e., we want to make the greater MPI community aware that: 1) there are MPI-1 constructs that were initially deprecated and finally removed from the standard (this happened years ago) 2) MPI applications should start moving away from these removed MPI-1 constructs 3) Open MPI is disabling these removed MPI-1 constructs by default in Open MPI v4.0. The current plan is to actually fully remove these MPI-1 constructs in Open MPI v5.0 (perhaps in 2019?). For the v4.0.x series, you can configure/build Open MPI with --enable-mpi1-compatibility to re-activate MPI_LB and MPI_UB. > On Oct 11, 2018, at 10:58 AM, Patrick Begou > <patrick.be...@legi.grenoble-inp.fr> wrote: > > Hi Jeff and George > > thanks for your answer. I find some time to work again on this problem dans I > have downloaded OpenMPI 4.0.0rc4. It compiles without any problem but > building the first dependance of my code (hdf5 1.8.12) with this version 4 > fails: > > ../../src/H5Smpio.c:355:28: error: 'MPI_LB' undeclared (first use in this > function); did you mean 'MPI_IO'? > old_types[0] = MPI_LB; > ^~~~~~ > MPI_IO > ../../src/H5Smpio.c:355:28: note: each undeclared identifier is reported only > once for each function it appears in > ../../src/H5Smpio.c:357:28: error: 'MPI_UB' undeclared (first use in this > function); did you mean 'MPI_LB'? > old_types[2] = MPI_UB; > ^~~~~~ > MPI_LB > ../../src/H5Smpio.c:365:24: warning: implicit declaration of function > 'MPI_Type_struct'; did you mean 'MPI_Type_size_x'? > [-Wimplicit-function-declaration] > mpi_code = MPI_Type_struct(3, /* count */ > ^~~~~~~~~~~~~~~ > MPI_Type_size_x > > It is not possible for me to use a more recent hdf5 version as the API as > changed and will not work with the code, even in compatible mode. > > At this time, I'll try version 3 from the git repo if I have the required > tools available on my server. All prerequisites compile successfully with > 3.1.2. > > Patrick > > -- > =================================================================== > | Equipe M.O.S.T. | | > | Patrick BEGOU | mailto:patrick.be...@grenoble-inp.fr | > | LEGI | | > | BP 53 X | Tel 04 76 82 51 35 | > | 38041 GRENOBLE CEDEX | Fax 04 76 82 52 71 | > =================================================================== > -- Jeff Squyres jsquy...@cisco.com _______________________________________________ users mailing list users@lists.open-mpi.org https://lists.open-mpi.org/mailman/listinfo/users
