I fixed it, the correct file was in /lib64, not in /lib. Thank you for your help. On Oct 3, 2018, at 11:30 PM, Castellana Michele <michele.castell...@curie.fr<mailto:michele.castell...@curie.fr>> wrote:
Thank you, I found some libcrypto files in /usr/lib indeed: $ ls libcry* libcrypt-2.17.so libcrypto.so.10 libcrypto.so.1.0.2k libcrypt.so.1 but I could not find libcrypto.so.0.9.8. Here<https://www.howopensource.com/2011/08/utserver-error-while-loading-shared-libraries-libssl-so-0-9-8-libcrypto-so-0-9-8-solved/> they suggest to create a hyperlink, but if I do I still get an error from MPI. Is there another way around this? Best, On Oct 3, 2018, at 11:00 PM, Jeff Squyres (jsquyres) via users <users@lists.open-mpi.org<mailto:users@lists.open-mpi.org>> wrote: It's probably in your Linux distro somewhere -- I'd guess you're missing a package (e.g., an RPM or a deb) out on your compute nodes...? On Oct 3, 2018, at 4:24 PM, Castellana Michele <michele.castell...@curie.fr<mailto:michele.castell...@curie.fr>> wrote: Dear Ralph, Thank you for your reply. Do you know where I could find libcrypto.so.0.9.8 ? Best, On Oct 3, 2018, at 9:41 PM, Ralph H Castain <r...@open-mpi.org<mailto:r...@open-mpi.org>> wrote: Actually, I see that you do have the tm components built, but they cannot be loaded because you are missing libcrypto from your LD_LIBRARY_PATH On Oct 3, 2018, at 12:33 PM, Ralph H Castain <r...@open-mpi.org<mailto:r...@open-mpi.org>> wrote: Did you configure OMPI —with-tm=<path-to-PBS-libs>? It looks like we didn’t build PBS support and so we only see one node with a single slot allocated to it. On Oct 3, 2018, at 12:02 PM, Castellana Michele <michele.castell...@curie.fr<mailto:michele.castell...@curie.fr>> wrote: Dear all, I am having trouble running an MPI code across multiple cores on a new computer cluster, which uses PBS. Here is a minimal example, where I want to run two MPI processes, each on a different node. The PBS script is #!/bin/bash #PBS -l walltime=00:01:00 #PBS -l mem=1gb #PBS -l nodes=2:ppn=1 #PBS -q batch #PBS -N test mpirun -np 2 ./code.o and when I submit it with $qsub script.sh I get the following message in the PBS error file $ cat test.e1234 [shbli040:08879] mca_base_component_repository_open: unable to open mca_plm_tm: libcrypto.so.0.9.8: cannot open shared object file: No such file or directory (ignored) [shbli040:08879] mca_base_component_repository_open: unable to open mca_oob_ud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored) [shbli040:08879] mca_base_component_repository_open: unable to open mca_ras_tm: libcrypto.so.0.9.8: cannot open shared object file: No such file or directory (ignored) -------------------------------------------------------------------------- There are not enough slots available in the system to satisfy the 2 slots that were requested by the application: ./code.o Either request fewer slots for your application, or make more slots available for use. ————————————————————————————————————— The PBS version is $ qstat --version Version: 6.1.2 and here is some additional information on the MPI version $ mpicc -v Using built-in specs. COLLECT_GCC=/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper Target: x86_64-redhat-linux […] Thread model: posix gcc version 4.8.5 20150623 (Red Hat 4.8.5-28) (GCC) Do you guys know what may be the issue here? Thank you Best, _______________________________________________ users mailing list users@lists.open-mpi.org<mailto:users@lists.open-mpi.org> https://lists.open-mpi.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org<mailto:users@lists.open-mpi.org> https://lists.open-mpi.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org<mailto:users@lists.open-mpi.org> https://lists.open-mpi.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org<mailto:users@lists.open-mpi.org> https://lists.open-mpi.org/mailman/listinfo/users -- Jeff Squyres jsquy...@cisco.com<mailto:jsquy...@cisco.com> _______________________________________________ users mailing list users@lists.open-mpi.org<mailto:users@lists.open-mpi.org> https://lists.open-mpi.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org<mailto:users@lists.open-mpi.org> https://lists.open-mpi.org/mailman/listinfo/users
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