Might be also worth testing a master snapshot and see if that fixes the issue.
There are a couple of fixes being backported from master to v3.0.x and v3.1.x
now.
-Nathan
On Jul 11, 2018, at 03:16 PM, Noam Bernstein <noam.bernst...@nrl.navy.mil>
wrote:
On Jul 11, 2018, at 11:29 AM, Jeff Squyres (jsquyres) via users
<users@lists.open-mpi.org> wrote:
Ok, that would be great -- thanks.
Recompiling Open MPI with --enable-debug will turn on several debugging/sanity
checks inside Open MPI, and it will also enable debugging symbols. Hence, If
you can get a failure when a debug Open MPI build, it might give you a core
file that can be used to get a more detailed stack trace, poke around and see
if there's a NULL pointer somewhere, …etc.
I haven’t tried to get a core file yes, but it’s not producing any more info
from the runtime stack trace, despite configure with —enable-debug:
Image PC Routine Line Source
vasp.gamma_para.i 0000000002DCE8C1 Unknown Unknown Unknown
vasp.gamma_para.i 0000000002DCC9FB Unknown Unknown Unknown
vasp.gamma_para.i 0000000002D409E4 Unknown Unknown Unknown
vasp.gamma_para.i 0000000002D407F6 Unknown Unknown Unknown
vasp.gamma_para.i 0000000002CDCED9 Unknown Unknown Unknown
vasp.gamma_para.i 0000000002CE3DB6 Unknown Unknown Unknown
libpthread-2.12.s 0000003F8E60F7E0 Unknown Unknown Unknown
mca_btl_vader.so 00002B1AFA5FAC30 Unknown Unknown Unknown
mca_btl_vader.so 00002B1AFA5FD00D Unknown Unknown Unknown
libopen-pal.so.40 00002B1AE884327C opal_progress Unknown Unknown
mca_pml_ob1.so 00002B1AFB855DCE Unknown Unknown Unknown
mca_pml_ob1.so 00002B1AFB858305 mca_pml_ob1_send Unknown Unknown
libmpi.so.40.10.1 00002B1AE823A5DA ompi_coll_base_al Unknown Unknown
mca_coll_tuned.so 00002B1AFC6F0842 ompi_coll_tuned_a Unknown Unknown
libmpi.so.40.10.1 00002B1AE81B66F5 PMPI_Allreduce Unknown Unknown
libmpi_mpifh.so.4 00002B1AE7F2259B mpi_allreduce_ Unknown Unknown
vasp.gamma_para.i 000000000042D1ED m_sum_d_ 1300 mpi.F
vasp.gamma_para.i 000000000089947D nonl_mp_vnlacc_.R 1754 nonl.F
vasp.gamma_para.i 0000000000972C51 hamil_mp_hamiltmu 825 hamil.F
vasp.gamma_para.i 0000000001BD2608 david_mp_eddav_.R 419 davidson.F
vasp.gamma_para.i 0000000001D2179E elmin_.R 424 electron.F
vasp.gamma_para.i 0000000002B92452 vamp_IP_electroni 4783 main.F
vasp.gamma_para.i 0000000002B6E173 MAIN__ 2800 main.F
vasp.gamma_para.i 000000000041325E Unknown Unknown Unknown
libc-2.12.so 0000003F8E21ED1D __libc_start_main Unknown Unknown
vasp.gamma_para.i 0000000000413169 Unknown Unknown Unknown
This is the configure line that was supposedly used to create the library:
./configure --prefix=/usr/local/openmpi/3.1.1_debug/x86_64/ib/intel/11.1.080
--with-tm=/usr/local/torque --enable-mpirun-prefix-by-default --with-verbs=/usr
--with-verbs-libdir=/usr/lib64 --enable-debug
Is there any way I can confirm that the version of the openmpi library I think
I’m using really was compiled with debugging?
Noam
____________
|
|
|U.S. NAVAL|
|_RESEARCH_|
LABORATORY
Noam Bernstein, Ph.D.
Center for Materials Physics and Technology
U.S. Naval Research Laboratory
T +1 202 404 8628 F +1 202 404 7546
https://www.nrl.navy.mil
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