HI Si, Could you add --disable-builtin-atomics
to the configure options and see if the hang goes away? Howard 2018-07-02 8:48 GMT-06:00 Jeff Squyres (jsquyres) via users < users@lists.open-mpi.org>: > Simon -- > > You don't currently have another Open MPI installation in your PATH / > LD_LIBRARY_PATH, do you? > > I have seen dependency library loads cause "make check" to get confused, > and instead of loading the libraries from the build tree, actually load > some -- but not all -- of the required OMPI/ORTE/OPAL/etc. libraries from > an installation tree. Hilarity ensues (to include symptoms such as running > forever). > > Can you double check that you have no Open MPI libraries in your > LD_LIBRARY_PATH before running "make check" on the build tree? > > > > > On Jun 30, 2018, at 3:18 PM, Hammond, Simon David via users < > users@lists.open-mpi.org> wrote: > > > > Nathan, > > > > Same issue with OpenMPI 3.1.1 on POWER9 with GCC 7.2.0 and CUDA9.2. > > > > S. > > > > -- > > Si Hammond > > Scalable Computer Architectures > > Sandia National Laboratories, NM, USA > > [Sent from remote connection, excuse typos] > > > > > > On 6/16/18, 10:10 PM, "Nathan Hjelm" <hje...@me.com> wrote: > > > > Try the latest nightly tarball for v3.1.x. Should be fixed. > > > >> On Jun 16, 2018, at 5:48 PM, Hammond, Simon David via users < > users@lists.open-mpi.org> wrote: > >> > >> The output from the test in question is: > >> > >> Single thread test. Time: 0 s 10182 us 10 nsec/poppush > >> Atomics thread finished. Time: 0 s 169028 us 169 nsec/poppush > >> <then runs forever> > >> > >> S. > >> > >> -- > >> Si Hammond > >> Scalable Computer Architectures > >> Sandia National Laboratories, NM, USA > >> [Sent from remote connection, excuse typos] > >> > >> > >> On 6/16/18, 5:45 PM, "Hammond, Simon David" <sdha...@sandia.gov> wrote: > >> > >> Hi OpenMPI Team, > >> > >> We have recently updated an install of OpenMPI on POWER9 system > (configuration details below). We migrated from OpenMPI 2.1 to OpenMPI 3.1. > We seem to have a symptom where code than ran before is now locking up and > making no progress, getting stuck in wait-all operations. While I think > it's prudent for us to root cause this a little more, I have gone back and > rebuilt MPI and re-run the "make check" tests. The opal_fifo test appears > to hang forever. I am not sure if this is the cause of our issue but wanted > to report that we are seeing this on our system. > >> > >> OpenMPI 3.1.0 Configuration: > >> > >> ./configure --prefix=/home/projects/ppc64le-pwr9-nvidia/openmpi/3. > 1.0-nomxm/gcc/7.2.0/cuda/9.2.88 --with-cuda=$CUDA_ROOT --enable-mpi-java > --enable-java --with-lsf=/opt/lsf/10.1 --with-lsf-libdir=/opt/lsf/10. > 1/linux3.10-glibc2.17-ppc64le/lib --with-verbs > >> > >> GCC versions are 7.2.0, built by our team. CUDA is 9.2.88 from NVIDIA > for POWER9 (standard download from their website). We enable IBM's JDK > 8.0.0. > >> RedHat: Red Hat Enterprise Linux Server release 7.5 (Maipo) > >> > >> Output: > >> > >> make[3]: Entering directory `/home/sdhammo/openmpi/ > openmpi-3.1.0/test/class' > >> make[4]: Entering directory `/home/sdhammo/openmpi/ > openmpi-3.1.0/test/class' > >> PASS: ompi_rb_tree > >> PASS: opal_bitmap > >> PASS: opal_hash_table > >> PASS: opal_proc_table > >> PASS: opal_tree > >> PASS: opal_list > >> PASS: opal_value_array > >> PASS: opal_pointer_array > >> PASS: opal_lifo > >> <runs forever> > >> > >> Output from Top: > >> > >> 20 0 73280 4224 2560 S 800.0 0.0 17:22.94 lt-opal_fifo > >> > >> -- > >> Si Hammond > >> Scalable Computer Architectures > >> Sandia National Laboratories, NM, USA > >> [Sent from remote connection, excuse typos] > >> > >> > >> > >> > >> _______________________________________________ > >> users mailing list > >> users@lists.open-mpi.org > >> https://lists.open-mpi.org/mailman/listinfo/users > > > > > > _______________________________________________ > > users mailing list > > users@lists.open-mpi.org > > https://lists.open-mpi.org/mailman/listinfo/users > > > -- > Jeff Squyres > jsquy...@cisco.com > > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://lists.open-mpi.org/mailman/listinfo/users >
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