Ah, yes. That worked. Thanks, Howard. -Adam From: users <users-boun...@lists.open-mpi.org> on behalf of Howard Pritchard <hpprit...@gmail.com> Reply-To: Open MPI Users <users@lists.open-mpi.org> Date: Friday, May 4, 2018 at 1:13 PM To: Open MPI Users <users@lists.open-mpi.org> Subject: Re: [OMPI users] Debug build of v3.0.1 tarball
HI Adam, I think you'll have better luck setting the CFLAGS on the configure line. try ./configure CFLAGS="-g -O0" your other configury options. Howard 2018-05-04 12:09 GMT-06:00 Moody, Adam T. <mood...@llnl.gov<mailto:mood...@llnl.gov>>: Hi Howard, I do have a make clean after the configure. To be extra safe, I’m now also deleting the source directory and untarring for each build to make sure I have a clean starting point. I do get a successful build if I add --enable-debug to configure and then do a simple make that has no CFLAGS or LDFLAGS: make -j VERBOSE=1 So that’s good. However, looking at the compile lines that were used, I see a -g but no -O0. I’m trying to force the -g -O0, because our debuggers show the best info at that optimization level. If I then also add a CFLAGS=”-g -O0” to my make command, I see the “-g -O0” in the compile lines, but then the pthread link error shows up: make -j CFLAGS=”-g -O0” VERBOSE=1 CC opal_wrapper.o GENERATE opal_wrapper.1 CCLD opal_wrapper ../../../opal/.libs/libopen-pal.so: undefined reference to `pthread_atfork' collect2: error: ld returned 1 exit status make[2]: *** [opal_wrapper] Error 1 Also setting LDFLAGS fixes that up. Just wondering whether I’m going about it the right way in trying to get -g -O0 in the build. Thanks for your help, -Adam From: users <users-boun...@lists.open-mpi.org<mailto:users-boun...@lists.open-mpi.org>> on behalf of Howard Pritchard <hpprit...@gmail.com<mailto:hpprit...@gmail.com>> Reply-To: Open MPI Users <users@lists.open-mpi.org<mailto:users@lists.open-mpi.org>> Date: Friday, May 4, 2018 at 7:46 AM To: Open MPI Users <users@lists.open-mpi.org<mailto:users@lists.open-mpi.org>> Subject: Re: [OMPI users] Debug build of v3.0.1 tarball HI Adam, Sorry didn't notice you did try the --enable-debug flag. That should not have led to the link error building the opal dso. Did you do a make clean after rerunning configure? Howard 2018-05-04 8:22 GMT-06:00 Howard Pritchard <hpprit...@gmail.com<mailto:hpprit...@gmail.com>>: Hi Adam, Did you try using the --enable-debug configure option along with your CFLAGS options? You may want to see if that simplifies your build. In any case, we'll fix the problems you found. Howard 2018-05-03 15:00 GMT-06:00 Moody, Adam T. <mood...@llnl.gov<mailto:mood...@llnl.gov>>: Hello Open MPI team, I'm looking for the recommended way to produce a debug build of Open MPI v3.0.1 that compiles with “-g -O0” so that I get accurate debug info under a debugger. So far, I've gone through the following sequence. I started with CFLAGS="-g -O0" on make: shell$ ./configure --prefix=$installdir --disable-silent-rules \ --disable-new-dtags --enable-mpi-cxx --enable-cxx-exceptions --with-pmi shell$ make -j CFLAGS="-g -O0" VERBOSE=1 That led to the following error: In file included from ../../../../opal/util/arch.h:26:0, from btl_openib.h:43, from btl_openib_component.c:79: btl_openib_component.c: In function 'progress_pending_frags_wqe': btl_openib_component.c:3351:29: error: 'opal_list_item_t' has no member named 'opal_list_item_refcount' assert(0 == frag->opal_list_item_refcount); ^ make[2]: *** [btl_openib_component.lo] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: Leaving directory `.../openmpi-3.0.1/opal/mca/btl/openib' So it seems the assert is referring to a field structure that is protected by a debug flag. I then added --enable-debug to configure, which led to: make[2]: Entering directory `.../openmpi-3.0.1/opal/tools/wrappers' CC opal_wrapper.o GENERATE opal_wrapper.1 CCLD opal_wrapper ../../../opal/.libs/libopen-pal.so: undefined reference to `pthread_atfork' collect2: error: ld returned 1 exit status make[2]: *** [opal_wrapper] Error 1 make[2]: Leaving directory `.../openmpi-3.0.1/opal/tools/wrappers' Finally, if I also add LDFLAGS="-lpthread" to make, I get a build: shell$ ./configure --prefix=$installdir --enable-debug --disable-silent-rules \ --disable-new-dtags --enable-mpi-cxx --enable-cxx-exceptions --with-pmi shell$ make -j CFLAGS="-g -O0" LDFLAGS="-lpthread" VERBOSE=1 Am I doing this correctly? Is there a pointer to the configure/make flags for this? I did find this page that describes the developer build from a git clone, but that seemed a bit overkill since I am looking for a debug build from the distribution tarball instead of the git clone (avoid the autotools nightmare): https://www.open-mpi.org/source/building.php Thanks. -Adam _______________________________________________ users mailing list users@lists.open-mpi.org<mailto:users@lists.open-mpi.org> https://lists.open-mpi.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org<mailto:users@lists.open-mpi.org> https://lists.open-mpi.org/mailman/listinfo/users
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