hello!
i would like to run some mpi-java code on my raspberrypi, i install openmpi
directly with command "apt-get install openmpi-bin openmpi-doc
libopenmpi-dev"
i would like to know, can i run java-mpi program with my pi without
configuration myself? i see java bindings is on perhaps?
pi@raspberrypi002:~ $ ompi_info
Package: Open MPI buildd@bm-wb-02 Distribution
Open MPI: 2.0.2
Open MPI repo revision: v2.0.1-348-ge291d0e
Open MPI release date: Jan 31, 2017
Open RTE: 2.0.2
Open RTE repo revision: v2.0.1-348-ge291d0e
Open RTE release date: Jan 31, 2017
OPAL: 2.0.2
OPAL repo revision: v2.0.1-348-ge291d0e
OPAL release date: Jan 31, 2017
MPI API: 3.1.0
Ident string: 2.0.2
Prefix: /usr
Configured architecture: arm-unknown-linux-gnueabihf
Configure host: bm-wb-02
Configured by: buildd
Configured on: Thu Feb 23 17:01:08 UTC 2017
Configure host: bm-wb-02
Built by: buildd
Built on: Thu Feb 23 18:03:57 UTC 2017
Built host: bm-wb-02
C bindings: yes
C++ bindings: yes
Fort mpif.h: yes (all)
Fort use mpi: yes (full: ignore TKR)
Fort use mpi size: deprecated-ompi-info-value
Fort use mpi_f08: yes
Fort mpi_f08 compliance: The mpi_f08 module is available, but due to
limitations in the gfortran compiler, does not
support the following: array subsections, direct
passthru (where possible) to underlying Open MPI's
C functionality
Fort mpi_f08 subarrays: no
Java bindings: yes
Wrapper compiler rpath: disabled
C compiler: gcc
C compiler absolute: /usr/bin/gcc
C compiler family name: GNU
C compiler version: 6.3.0
C++ compiler: g++
C++ compiler absolute: /usr/bin/g++
Fort compiler: gfortran
Fort compiler abs: /usr/bin/gfortran
Fort ignore TKR: yes (!GCC$ ATTRIBUTES NO_ARG_CHECK ::)
Fort 08 assumed shape: yes
Fort optional args: yes
Fort INTERFACE: yes
Fort ISO_FORTRAN_ENV: yes
Fort STORAGE_SIZE: yes
Fort BIND(C) (all): yes
Fort ISO_C_BINDING: yes
Fort SUBROUTINE BIND(C): yes
Fort TYPE,BIND(C): yes
Fort T,BIND(C,name="a"): yes
Fort PRIVATE: yes
Fort PROTECTED: yes
Fort ABSTRACT: yes
Fort ASYNCHRONOUS: yes
Fort PROCEDURE: yes
Fort USE...ONLY: yes
Fort C_FUNLOC: yes
Fort f08 using wrappers: yes
Fort MPI_SIZEOF: yes
C profiling: yes
C++ profiling: yes
Fort mpif.h profiling: yes
Fort use mpi profiling: yes
Fort use mpi_f08 prof: yes
C++ exceptions: no
Thread support: posix (MPI_THREAD_MULTIPLE: yes, OPAL support:
yes,
OMPI progress: no, ORTE progress: yes, Event lib:
yes)
Sparse Groups: no
Internal debug support: no
MPI interface warnings: yes
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
dl support: yes
Heterogeneous support: yes
mpirun default --prefix: no
MPI I/O support: yes
MPI_WTIME support: gettimeofday
Symbol vis. support: yes
Host topology support: yes
and i dont know how, so i just download (openmpi-3.0.0.tar.gz) and
configurate it with "./configure --enable-mpi-java
--with-jdk-bindir=/usr/lib/jvm/jdk-8-oracle-arm32-vfp-hflt/bin
--with-jdk-headers=/usr/lib/jvm/jdk-8-oracle-arm32-vfp-hflt/include
--prefix=/home/pi/build/"
============================================================================
== Configuring Open MPI
============================================================================
*** Startup tests
checking build system type... armv7l-unknown-linux-gnueabihf
checking host system type... armv7l-unknown-linux-gnueabihf
checking target system type... armv7l-unknown-linux-gnueabihf
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
.........
but it failed when i use "sudo make"
pi@raspberrypi002:~/openmpi-3.0.0 $ make all
Making all in config
make[1]: Entering directory '/home/pi/openmpi-3.0.0/config'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/pi/openmpi-3.0.0/config'
Making all in contrib
make[1]: Entering directory '/home/pi/openmpi-3.0.0/contrib'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/pi/openmpi-3.0.0/contrib'
Making all in opal
make[1]: Entering directory '/home/pi/openmpi-3.0.0/opal'
Making all in include
make[2]: Entering directory '/home/pi/openmpi-3.0.0/opal/include'
make all-am
make[3]: Entering directory '/home/pi/openmpi-3.0.0/opal/include'
make[3]: Leaving directory '/home/pi/openmpi-3.0.0/opal/include'
make[2]: Leaving directory '/home/pi/openmpi-3.0.0/opal/include'
Making all in asm
make[2]: Entering directory '/home/pi/openmpi-3.0.0/opal/asm'
CC asm.lo
rm -f atomic-asm.S
ln -s "../../opal/asm/generated/atomic-local.s" atomic-asm.S
CPPAS atomic-asm.lo
atomic-asm.S: Assembler messages:
atomic-asm.S:7: Error: selected processor does not support `dmb' in ARM mode
atomic-asm.S:15: Error: selected processor does not support `dmb' in ARM
mode
atomic-asm.S:23: Error: selected processor does not support `dmb' in ARM
mode
atomic-asm.S:55: Error: selected processor does not support `dmb' in ARM
mode
atomic-asm.S:70: Error: selected processor does not support `dmb' in ARM
mode
atomic-asm.S:86: Error: selected processor does not support `ldrexd
r4,r5,[r0]' in ARM mode
atomic-asm.S:91: Error: selected processor does not support `strexd
r1,r6,r7,[r0]' in ARM mode
atomic-asm.S:107: Error: selected processor does not support `ldrexd
r4,r5,[r0]' in ARM mode
atomic-asm.S:112: Error: selected processor does not support `strexd
r1,r6,r7,[r0]' in ARM mode
atomic-asm.S:115: Error: selected processor does not support `dmb' in ARM
mode
atomic-asm.S:130: Error: selected processor does not support `ldrexd
r4,r5,[r0]' in ARM mode
atomic-asm.S:135: Error: selected processor does not support `dmb' in ARM
mode
atomic-asm.S:136: Error: selected processor does not support `strexd
r1,r6,r7,[r0]' in ARM mode
Makefile:1821: recipe for target 'atomic-asm.lo' failed
make[2]: *** [atomic-asm.lo] Error 1
make[2]: Leaving directory '/home/pi/openmpi-3.0.0/opal/asm'
Makefile:2363: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/home/pi/openmpi-3.0.0/opal'
Makefile:1884: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
i 've also tried "./configure CCASFLAGS=-march=native" or "./configure
CCASFLAGS=-march=armv7l" or "CC=gcc-4.9 CXX=g++-4.9 FC=gfortran-4.9
./configure --prefix=... --enable-mpirun-prefix-by-default"
and after all these configuration, it still failed to build.
i' seen post here
http://users.open-mpi.narkive.com/ucEtL9aU/ompi-users-building-openmpi-on-raspberry-pi-2
and here
https://developer.arm.com/products/software-development-tools/hpc/resources/porting-and-tuning/building-openmpi-with-arm-compiler
but still i dont know how, how can i install openmpi on my raspberrypi 3
and run mpi-java program? I m 99.99% green hand, help me please. I would be
very greatful if you have any advices for me.
Best Regards
Jia Peng
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