Hello all,
Thank you for your responses.
I worked around the issue by building and installing pmix-1.1.1 separately, to
directory
/opt/pmix-1.1.1, then using
--with-pmix=/opt/pmix-1.1.1
when configuring OpenMPI 3.0.0.
Sincerely,
Ted Sussman
On 2 Oct 2017 at 19:30, Jeff Squyres (jsquyres) wrote:
> I think that file does get included indirectly, but the real issue is the old
> Intel compiler not supporting (struct argparse). I.e., the solution might
> well be "use a newer compiler."
>
>
> > On Oct 2, 2017, at 2:44 PM, r...@open-mpi.org wrote:
> >
> > I correctly understood the file and the errors. I´m just pointing out that
> > the referenced file cannot possibly contain a pointer to
> > opal/threads/condition.h. There is no include in that file that can pull in
> > that path.
> >
> >
> >> On Oct 2, 2017, at 11:39 AM, Jeff Squyres (jsquyres) <jsquy...@cisco.com>
> >> wrote:
> >>
> >> Ralph --
> >>
> >> I think he cited a typo in his email. The actual file he is referring to
> >> is
> >>
> >> -----
> >> $ find . -name pmix_mmap.c
> >> ./opal/mca/pmix/pmix2x/pmix/src/sm/pmix_mmap.c
> >> -----
> >>
> >> From his log file, there appear to be two problems:
> >>
> >> -----
> >> sm/pmix_mmap.c(66): warning #266: function "posix_fallocate" declared
> >> implicitly
> >> if (0 != (rc = posix_fallocate(sm_seg->seg_id, 0, size))) {
> >> ^
> >>
> >> sm/pmix_mmap.c(88): warning #266: function "ftruncate" declared implicitly
> >> if (0 != ftruncate(sm_seg->seg_id, size)) {
> >> ^
> >> -----
> >>
> >> (which are just warnings but we should probably fix them)
> >>
> >> and
> >>
> >> -----
> >> /opt/openmpi-3.0.0-Intel-src/opal/threads/condition.h(96): error: pointer
> >> to incomplete class type is not allowed
> >> absolute.tv_sec = abstime->tv_sec;
> >> ^
> >> -----
> >>
> >> This one appears to be the actual error.
> >>
> >> abstime is a (struct timespec), which, according to
> >> http://pubs.opengroup.org/onlinepubs/7908799/xsh/time.h.html, should be
> >> declared in <time.h>, which is definitely #included by
> >> opal/threads/condition.h.
> >>
> >> Since this error occurred with Intel 11.x but didn't occur with later
> >> versions of the Intel compiler, I'm wondering if the Intel 11.x compiler
> >> suite didn't support (struct timespec).
> >>
> >> Can you stop using Intel 11.x and only use later versions of the Intel
> >> compiler?
> >>
> >>
> >>
> >>> On Oct 1, 2017, at 11:59 PM, r...@open-mpi.org wrote:
> >>>
> >>> Afraid I´m rather stumped on this one. There is no such include file in
> >>> pmix_mmap, nor is there any include file that might lead to it. You might
> >>> try starting again from scratch to ensure you aren´t getting some weird
> >>> artifact.
> >>>
> >>>
> >>>> On Sep 29, 2017, at 1:12 PM, Ted Sussman <ted.suss...@adina.com> wrote:
> >>>>
> >>>> Hello all,
> >>>>
> >>>> I downloaded openmpi-3.0.0.tar.gz and attempted to build it on my Red
> >>>> Hat Linux computer, kernel 2.6.18-194.el5.
> >>>>
> >>>> The C compiler used is Intel icc, version 11.1.
> >>>>
> >>>> The make failed when compiling pmix_mmap, with messages such as
> >>>>
> >>>> /opt/openmpi-3.0.0-Intel-src/opal/threads/conditions.h(96): error:
> >>>> pointer to incomplete class type is not allowed
> >>>>
> >>>> absolute.tv_sec = abstime->tv_sec;
> >>>>
> >>>> I have attached a tar file with the output from configure and the output
> >>>> from make.
> >>>>
> >>>> I was able to build openmpi-2.1.1 using the same computer and compiler.
> >>>>
> >>>> I was able to build openmpi-3.0.0 using a different computer, with icc
> >>>> version 14.0.4.
> >>>>
> >>>> Can you please tell me how I can avoid this compilation error, when
> >>>> using icc version 11.1?
> >>>>
> >>>> Sincerely,
> >>>>
> >>>> Ted Sussman
> >>>>
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> >>>>
> >>>> ---- File information -----------
> >>>> File: openmpi.tgz
> >>>> Date: 29 Sep 2017, 15:59
> >>>> Size: 41347 bytes.
> >>>> Type: Binary
> >>>> <openmpi.tgz>_______________________________________________
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> >>
> >>
> >> --
> >> Jeff Squyres
> >> jsquy...@cisco.com
> >>
> >> _______________________________________________
> >> users mailing list
> >> users@lists.open-mpi.org
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> >
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>
> --
> Jeff Squyres
> jsquy...@cisco.com
>
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