This is a known issue due to something in the NVIDIA library and it’s interactions with hwloc. Your tarball tag indicates you should have the attempted fix in it, so likely that wasn’t adequate. See https://github.com/open-mpi/ompi/pull/3283 <https://github.com/open-mpi/ompi/pull/3283> for the discussion
> On Apr 20, 2017, at 8:11 AM, Siegmar Gross > <siegmar.gr...@informatik.hs-fulda.de> wrote: > > Hi, > > I tried to install openmpi-master-201704200300-ded63c on my "SUSE Linux > Enterprise Server 12.2 (x86_64)" with Sun C 5.14 and gcc-6.3.0. > Unfortunately, "make" breaks with the following error for gcc. I've had > no problems with cc. > > > loki openmpi-master-201704200300-ded63c5-Linux.x86_64.64_gcc 136 grep > topology log.make.Linux.x86_64.64_gcc > CC topology.lo > CC topology-noos.lo > CC topology-synthetic.lo > CC topology-custom.lo > CC topology-xml.lo > CC topology-xml-nolibxml.lo > CC topology-pci.lo > CC topology-nvml.lo > ../../../../../../../openmpi-master-201704200300-ded63c5/opal/mca/hwloc/hwloc1116/hwloc/src/topology-nvml.c:14:18: > fatal error: nvml.h: No such file or directory > Makefile:2181: recipe for target 'topology-nvml.lo' failed > make[4]: *** [topology-nvml.lo] Error 1 > loki openmpi-master-201704200300-ded63c5-Linux.x86_64.64_gcc 137 > > > > > > loki openmpi-master-201704200300-ded63c5-Linux.x86_64.64_gcc 137 grep > topology > ../openmpi-master-201704200300-ded63c5-Linux.x86_64.64_cc/log.make.Linux.x86_64.64_cc > CC topology.lo > CC topology-noos.lo > CC topology-synthetic.lo > "../../../../../../../openmpi-master-201704200300-ded63c5/opal/mca/hwloc/hwloc1116/hwloc/src/topology-synthetic.c", > line 851: warning: initializer will be sign-extended: -1 > CC topology-custom.lo > "../../../../../../../openmpi-master-201704200300-ded63c5/opal/mca/hwloc/hwloc1116/hwloc/src/topology-custom.c", > line 88: warning: initializer will be sign-extended: -1 > CC topology-xml.lo > "../../../../../../../openmpi-master-201704200300-ded63c5/opal/mca/hwloc/hwloc1116/hwloc/src/topology-xml.c", > line 1815: warning: initializer will be sign-extended: -1 > CC topology-xml-nolibxml.lo > CC topology-pci.lo > CC topology-nvml.lo > CC topology-linux.lo > "../../../../../../../openmpi-master-201704200300-ded63c5/opal/mca/hwloc/hwloc1116/hwloc/src/topology-linux.c", > line 2919: warning: initializer will be sign-extended: -1 > "../../../../../../../openmpi-master-201704200300-ded63c5/opal/mca/hwloc/hwloc1116/hwloc/src/topology-linux.c", > line 2919: warning: initializer will be sign-extended: -1 > "../../../../../../../openmpi-master-201704200300-ded63c5/opal/mca/hwloc/hwloc1116/hwloc/src/topology-linux.c", > line 2919: warning: initializer will be sign-extended: -1 > CC topology-hardwired.lo > CC topology-x86.lo > "../../../../../../../openmpi-master-201704200300-ded63c5/opal/mca/hwloc/hwloc1116/hwloc/src/topology-x86.c", > line 122: warning: initializer will be sign-extended: -1 > loki openmpi-master-201704200300-ded63c5-Linux.x86_64.64_gcc 138 > > > > > I used the following commands to configure the package. > > loki openmpi-master-201704200300-ded63c5-Linux.x86_64.64_gcc 145 head -7 > config.log |tail -1 > $ ../openmpi-master-201704200300-ded63c5/configure > --prefix=/usr/local/openmpi-master_64_gcc > --libdir=/usr/local/openmpi-master_64_gcc/lib64 > --with-jdk-bindir=/usr/local/jdk1.8.0_66/bin > --with-jdk-headers=/usr/local/jdk1.8.0_66/include > JAVA_HOME=/usr/local/jdk1.8.0_66 LDFLAGS=-m64 CC=gcc CXX=g++ FC=gfortran > CFLAGS=-m64 CXXFLAGS=-m64 FCFLAGS=-m64 CPP=cpp CXXCPP=cpp --enable-mpi-cxx > --enable-cxx-exceptions --enable-mpi-java --with-cuda=/usr/local/cuda > --with-valgrind=/usr/local/valgrind --with-hwloc=internal --without-verbs > --with-wrapper-cflags=-std=c11 -m64 --with-wrapper-cxxflags=-m64 > --with-wrapper-fcflags=-m64 --enable-debug > loki openmpi-master-201704200300-ded63c5-Linux.x86_64.64_gcc 146 > > > > > loki openmpi-master-201704200300-ded63c5-Linux.x86_64.64_gcc 146 head -7 > ../openmpi-master-201704200300-ded63c5-Linux.x86_64.64_cc/config.log | tail -1 > $ ../openmpi-master-201704200300-ded63c5/configure > --prefix=/usr/local/openmpi-master_64_cc > --libdir=/usr/local/openmpi-master_64_cc/lib64 > --with-jdk-bindir=/usr/local/jdk1.8.0_66/bin > --with-jdk-headers=/usr/local/jdk1.8.0_66/include > JAVA_HOME=/usr/local/jdk1.8.0_66 LDFLAGS=-m64 -mt -Wl,-z -Wl,noexecstack > -L/usr/local/lib64 -L/usr/local/cuda/lib64 CC=cc CXX=CC FC=f95 CFLAGS=-m64 > -mt -I/usr/local/include -I/usr/local/cuda/include CXXFLAGS=-m64 > -I/usr/local/include -I/usr/local/cuda/include FCFLAGS=-m64 CPP=cpp > -I/usr/local/include -I/usr/local/cuda/include CXXCPP=cpp > -I/usr/local/include -I/usr/local/cuda/include --enable-mpi-cxx > --enable-cxx-exceptions --enable-mpi-java --with-cuda=/usr/local/cuda > --with-valgrind=/usr/local/valgrind --with-hwloc=internal --without-verbs > --with-wrapper-cflags=-m64 -mt --with-wrapper-cxxflags=-m64 > --with-wrapper-fcflags=-m64 --with-wrapper-ldflags=-mt --enable-debug > loki openmpi-master-201704200300-ded63c5-Linux.x86_64.64_gcc 147 > > > > I would be grateful, if somebody can fix the problem. Do you need anything > else? Thank you very much for any help in advance. > > > Kind regards > > Siegmar > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users
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