Julien, the fortran lib is in /usr/lib/libmpi_mpifh.so.12 the C lib is the one from Intel MPI
i guess the C lib is in /usr/lib, and not /usr/lib/openmpi/lib prepending /usr/lib is never recommended, so i suggest you simply remove /opt/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib from your LD_LIBRARY_PATH Cheers, Gilles On Tue, Nov 15, 2016 at 10:33 PM, Julien de Troullioud de Lanversin <j.detroulli...@gmail.com> wrote: > Gilles, > > > Thank you for your fast reply. > > When I type whereis mpifort I have the following: mpifort: > /usr/bin/mpifort.openmpi /usr/bin/mpifort /usr/share/man/man1/mpifort.1.gz > > I made sure I exported the LD_LIBRARY_PATH after I prepended > /usr/lib/openmpi/lib. The same error is produced. > > If I type ldd ./test I get the following: > > linux-vdso.so.1 => (0x00007ffde08ef000) > libmpi_mpifh.so.12 => /usr/lib/libmpi_mpifh.so.12 (0x00002b5a2132c000) > libgfortran.so.3 => /usr/lib/x86_64-linux-gnu/libgfortran.so.3 > (0x00002b5a21585000) > libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00002b5a218b0000) > libmpi.so.12 => > /opt/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib/libmpi.so.12 > (0x00002b5a21c7a000) > libopen-pal.so.13 => /usr/lib/libopen-pal.so.13 (0x00002b5a2243c000) > libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 > (0x00002b5a226d9000) > libquadmath.so.0 => /usr/lib/x86_64-linux-gnu/libquadmath.so.0 > (0x00002b5a228f7000) > libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00002b5a22b36000) > libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 > (0x00002b5a22e3f000) > /lib64/ld-linux-x86-64.so.2 (0x000055689175a000) > librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00002b5a23056000) > libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00002b5a2325e000) > libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1 (0x00002b5a23462000) > libhwloc.so.5 => /usr/lib/x86_64-linux-gnu/libhwloc.so.5 > (0x00002b5a23666000) > libnuma.so.1 => /usr/lib/x86_64-linux-gnu/libnuma.so.1 > (0x00002b5a238a0000) > libltdl.so.7 => /usr/lib/x86_64-linux-gnu/libltdl.so.7 > (0x00002b5a23aac000) > > > Thanks. > > > > Julien > > > > 2016-11-15 23:52 GMT-05:00 Gilles Gouaillardet > <gilles.gouaillar...@gmail.com>: >> >> Julien, >> >> first, make sure you are using the Open MPI wrapper >> which mpifort >> should be /usr/lib/openmpi/bin if i understand correctly >> then make sure you exported your LD_LIBRARY_PATH *after* you prepended >> the path to Open MPI lib >> in your .bashrc you can either >> LD_LIBRARY_PATH=/usr/lib/openmpi/lib:$LD_LIBRARY_PATH >> export LD_LIBRARY_PATH >> or directly >> export LD_LIBRARY_PATH=/usr/lib/openmpi/lib:$LD_LIBRARY_PATH >> >> then you can >> ldd ./test >> and comfirm all MPI libs (both C and Fortran) are pointing to Open MPI >> >> Cheers, >> >> Gilles >> >> On Tue, Nov 15, 2016 at 9:41 PM, Julien de Troullioud de Lanversin >> <j.detroulli...@gmail.com> wrote: >> > Hi all, >> > >> > >> > I am completely new to MPI (and relatively new to linux). I am sorry if >> > the >> > problem I encountered is obvious to solve. >> > >> > When I run the following simple test with mpirun: >> > >> > program hello_world >> > >> > use mpi >> > integer ierr >> > >> > call MPI_INIT ( ierr ) >> > print *, "Hello world" >> > call MPI_FINALIZE ( ierr ) >> > >> > end program hello_world >> > >> > >> > I get the following error : >> > ./test: symbol lookup error: /usr/lib/libmpi_mpifh.so.12: undefined >> > symbol: >> > mpi_fortran_weights_empty >> > >> > I compiled the source code like this: mpifort -o test test.f90 >> > >> > I look up on the internet and I understand that it is a problem with the >> > shared library of open mpi. But I think I correctly added the open mpi >> > lib >> > to ld_library_path (I added the first directory -- /usr/lib/openmpi/lib >> > -- >> > via .bashrc). Here is an echo $LD_LIBRARY_PATH: >> > >> > >> > $/usr/lib/openmpi/lib:/opt/intel/compilers_and_libraries_2016.1.150/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2016.1.150/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2016.1.150/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2016.1.150/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2016.1.150/linux/mkl/lib/intel64:/opt/intel/compilers_and_libraries_2016.1.150/linux/tbb/lib/intel64/gcc4.4:/opt/intel/debugger_2016/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2016.1.150/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2016.1.150/linux/daal/../compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2016.1.150/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2016.1.150/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2016.1.150/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2016.1.150/linux/ipp/lib/intel64:/opt/intel >> >> /compilers_and_libraries_2016.1.150/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2016.1.150/linux/mkl/lib/intel64:/opt/intel/compilers_and_libraries_2016.1.150/linux/tbb/lib/intel64/gcc4.4:/opt/intel/debugger_2016/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2016.1.150/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2016.1.150/linux/daal/../tbb/lib/intel64_lin/gcc4.4:/opt/intel/compilers_and_libraries_2016.1.150/linux/daal/../compiler/lib/intel64_lin >> > >> > The path that my system uses at run time (/usr/lib/) is not in the >> > library >> > path. I thus don't know why this path is used. >> > >> > I would be thankful if anyone could help me with this issue. >> > >> > >> > Best, >> > >> > >> > Julien de Troullioud de Lanversin >> > >> > _______________________________________________ >> > users mailing list >> > users@lists.open-mpi.org >> > https://rfd.newmexicoconsortium.org/mailman/listinfo/users >> _______________________________________________ >> users mailing list >> users@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > > > -- > de Troullioud de Lanversin Julien > > 瞩戈亮 > > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
