Giacomo -- Are you able to run anything that is compiled by that Intel compiler installation?
> On May 5, 2016, at 12:02 PM, Gus Correa <g...@ldeo.columbia.edu> wrote: > > Hi Giacomo > > Some programs fail with segmentation fault > because the stack size is too small. > [But others because of bugs in memory allocation/management, etc.] > > Have you tried > > ulimit -s unlimited > > before you run the program? > > Are you using a single machine or a cluster? > If you're using infiniband you may need also to make the locked memory > unlimited: > > ulimit -l unlimited > > I hope this helps, > Gus Correa > > On 05/05/2016 05:15 AM, Giacomo Rossi wrote: >> gdb /opt/openmpi/1.10.2/intel/16.0.3/bin/mpif90 >> GNU gdb (GDB) 7.11 >> Copyright (C) 2016 Free Software Foundation, Inc. >> License GPLv3+: GNU GPL version 3 or later >> <http://gnu.org/licenses/gpl.html> >> This is free software: you are free to change and redistribute it. >> There is NO WARRANTY, to the extent permitted by law. Type "show copying" >> and "show warranty" for details. >> This GDB was configured as "x86_64-pc-linux-gnu". >> Type "show configuration" for configuration details. >> For bug reporting instructions, please see: >> <http://www.gnu.org/software/gdb/bugs/>. >> Find the GDB manual and other documentation resources online at: >> <http://www.gnu.org/software/gdb/documentation/>. >> For help, type "help". >> Type "apropos word" to search for commands related to "word"... >> Reading symbols from /opt/openmpi/1.10.2/intel/16.0.3/bin/mpif90...(no >> debugging symbols found)...done. >> (gdb) r -v >> Starting program: /opt/openmpi/1.10.2/intel/16.0.3/bin/mpif90 -v >> >> Program received signal SIGSEGV, Segmentation fault. >> 0x00007ffff6858f38 in ?? () >> (gdb) bt >> #0 0x00007ffff6858f38 in ?? () >> #1 0x00007ffff7de5828 in _dl_relocate_object () from >> /lib64/ld-linux-x86-64.so.2 >> #2 0x00007ffff7ddcfa3 in dl_main () from /lib64/ld-linux-x86-64.so.2 >> #3 0x00007ffff7df029c in _dl_sysdep_start () from >> /lib64/ld-linux-x86-64.so.2 >> #4 0x00007ffff7dddd4a in _dl_start () from /lib64/ld-linux-x86-64.so.2 >> #5 0x00007ffff7dd9d98 in _start () from /lib64/ld-linux-x86-64.so.2 >> #6 0x0000000000000002 in ?? () >> #7 0x00007fffffffaa8a in ?? () >> #8 0x00007fffffffaab6 in ?? () >> #9 0x0000000000000000 in ?? () >> >> Giacomo Rossi Ph.D., Space Engineer >> >> Research Fellow at Dept. of Mechanical and Aerospace Engineering, >> "Sapienza" University of Rome >> *p: *(+39) 0692927207 | *m**: *(+39) 3408816643 | *e: >> *giacom...@gmail.com <mailto:giacom...@gmail.com> >> <mailto:giacomo.ro...@uniroma1.it> >> Member of Fortran-FOSS-programmers >> <https://github.com/Fortran-FOSS-Programmers> >> >> >> 2016-05-05 10:44 GMT+02:00 Giacomo Rossi <giacom...@gmail.com >> <mailto:giacom...@gmail.com>>: >> >> Here the result of ldd command: >> 'ldd /opt/openmpi/1.10.2/intel/16.0.3/bin/mpif90 >> linux-vdso.so.1 (0x00007ffcacbbe000) >> libopen-pal.so.13 => >> /opt/openmpi/1.10.2/intel/16.0.3/lib/libopen-pal.so.13 >> (0x00007fa9597a9000) >> libm.so.6 => /usr/lib/libm.so.6 (0x00007fa9594a4000) >> libpciaccess.so.0 => /usr/lib/libpciaccess.so.0 (0x00007fa95929a000) >> libdl.so.2 => /usr/lib/libdl.so.2 (0x00007fa959096000) >> librt.so.1 => /usr/lib/librt.so.1 (0x00007fa958e8e000) >> libutil.so.1 => /usr/lib/libutil.so.1 (0x00007fa958c8b000) >> libgcc_s.so.1 => /usr/lib/libgcc_s.so.1 (0x00007fa958a75000) >> libpthread.so.0 => /usr/lib/libpthread.so.0 (0x00007fa958858000) >> libc.so.6 => /usr/lib/libc.so.6 (0x00007fa9584b7000) >> libimf.so => >> >> /home/giacomo/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libimf.so >> (0x00007fa957fb9000) >> libsvml.so => >> >> /home/giacomo/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libsvml.so >> (0x00007fa9570ad000) >> libirng.so => >> >> /home/giacomo/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libirng.so >> (0x00007fa956d3b000) >> libintlc.so.5 => >> >> /home/giacomo/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libintlc.so.5 >> (0x00007fa956acf000) >> /lib64/ld-linux-x86-64.so.2 (0x00007fa959ab9000)' >> >> I can't provide a core file, because I can't compile or launch any >> program with mpifort... I've always the error 'core dumped' also >> when I try to compile a program with mpifort, and of course there >> isn't any core file. >> >> >> Giacomo Rossi Ph.D., Space Engineer >> >> Research Fellow at Dept. of Mechanical and Aerospace >> Engineering, "Sapienza" University of Rome >> *p: *(+39) 0692927207 <tel:%28%2B39%29%200692927207> | *m**: >> *(+39) 3408816643 <tel:%28%2B39%29%203408816643> | *e: >> *giacom...@gmail.com <mailto:giacom...@gmail.com> >> <mailto:giacomo.ro...@uniroma1.it> >> Member of Fortran-FOSS-programmers >> <https://github.com/Fortran-FOSS-Programmers> >> >> >> 2016-05-05 8:50 GMT+02:00 Giacomo Rossi <giacom...@gmail.com >> <mailto:giacom...@gmail.com>>: >> >> I’ve installed the latest version of Intel Parallel Studio >> (16.0.3), then I’ve downloaded the latest version of openmpi >> (1.10.2) and I’ve compiled it with >> >> `./configure CC=icc CXX=icpc F77=ifort FC=ifort >> --prefix=/opt/openmpi/1.10.2/intel/16.0.3` >> >> then I've installed and everything seems ok, but when I try the >> simple command >> >> ' /opt/openmpi/1.10.2/intel/16.0.3/bin/mpif90 -v' >> >> I receive the following error >> >> 'Segmentation fault (core dumped)' >> >> I'm on ArchLinux, with kernel 4.5.1-1-ARCH; I've attache to this >> email the config.log file compressed with bzip2. >> >> Any help will be appreciated! >> >> Giacomo Rossi Ph.D., Space Engineer >> >> Research Fellow at Dept. of Mechanical and Aerospace >> Engineering, "Sapienza" University of Rome >> *p: *(+39) 0692927207 <tel:%28%2B39%29%200692927207> | *m**: >> *(+39) 3408816643 <tel:%28%2B39%29%203408816643> | *e: >> *giacom...@gmail.com <mailto:giacom...@gmail.com> >> <mailto:giacomo.ro...@uniroma1.it> >> Member of Fortran-FOSS-programmers >> <https://github.com/Fortran-FOSS-Programmers> >> >> >> >> >> >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/users >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2016/05/29093.php >> > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2016/05/29098.php -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
