Thanks Rowena,
greg
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Today's Topics:
1. Re: runtime errors for openmpi-v2.x-dev-1280-gc110ae8
(Siegmar Gross)
2. Re: runtime errors for openmpi-v2.x-dev-1280-gc110ae8
(Gilles Gouaillardet)
----------------------------------------------------------------------
Message: 1
List-Post: users@lists.open-mpi.org
Date: Wed, 27 Apr 2016 18:17:35 +0200
From: Siegmar Gross <siegmar.gr...@informatik.hs-fulda.de>
To: Open MPI Users <us...@open-mpi.org>
Subject: Re: [OMPI users] runtime errors for
openmpi-v2.x-dev-1280-gc110ae8
Message-ID:
<a8d0facb-7b67-2a79-8fba-015819983...@informatik.hs-fulda.de>
Content-Type: text/plain; charset="windows-1252"; Format="flowed"
Hi Gilles,
it is not necessary to have a heterogeneous environment to reproduce
the error as you can see below. All machines are 64 bit.
tyr spawn 119 ompi_info | grep -e "OPAL repo revision" -e "C compiler absolute"
OPAL repo revision: v2.x-dev-1290-gbd0e4e1
C compiler absolute: /usr/local/gcc-5.1.0/bin/gcc
tyr spawn 120 uname -a
SunOS tyr.informatik.hs-fulda.de 5.10 Generic_150400-11 sun4u sparc SUNW,A70
Solaris
tyr spawn 121 mpiexec -np 1 --host tyr,tyr,tyr,tyr spawn_multiple_master
Parent process 0 running on tyr.informatik.hs-fulda.de
I create 3 slave processes.
[tyr.informatik.hs-fulda.de:27286] PMIX ERROR: UNPACK-PAST-END in file
../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server_ops.c
at line 829
[tyr.informatik.hs-fulda.de:27286] PMIX ERROR: UNPACK-PAST-END in file
../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server.c
at line 2176
[tyr:27288] *** An error occurred in MPI_Comm_spawn_multiple
[tyr:27288] *** reported by process [3434086401,0]
[tyr:27288] *** on communicator MPI_COMM_WORLD
[tyr:27288] *** MPI_ERR_SPAWN: could not spawn processes
[tyr:27288] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now
abort,
[tyr:27288] *** and potentially your MPI job)
tyr spawn 122
sunpc1 fd1026 105 ompi_info | grep -e "OPAL repo revision" -e "C compiler
absolute"
OPAL repo revision: v2.x-dev-1290-gbd0e4e1
C compiler absolute: /usr/local/gcc-5.1.0/bin/gcc
sunpc1 fd1026 106 uname -a
SunOS sunpc1 5.10 Generic_147441-21 i86pc i386 i86pc Solaris
sunpc1 fd1026 107 mpiexec -np 1 --host sunpc1,sunpc1,sunpc1,sunpc1
spawn_multiple_master
Parent process 0 running on sunpc1
I create 3 slave processes.
[sunpc1:00368] PMIX ERROR: UNPACK-PAST-END in file
../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server_ops.c
at line 829
[sunpc1:00368] PMIX ERROR: UNPACK-PAST-END in file
../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server.c
at line 2176
[sunpc1:370] *** An error occurred in MPI_Comm_spawn_multiple
[sunpc1:370] *** reported by process [43909121,0]
[sunpc1:370] *** on communicator MPI_COMM_WORLD
[sunpc1:370] *** MPI_ERR_SPAWN: could not spawn processes
[sunpc1:370] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now
abort,
[sunpc1:370] *** and potentially your MPI job)
sunpc1 fd1026 108
linpc1 fd1026 105 ompi_info | grep -e "OPAL repo revision" -e "C compiler
absolute"
OPAL repo revision: v2.x-dev-1290-gbd0e4e1
C compiler absolute: /usr/local/gcc-5.1.0/bin/gcc
linpc1 fd1026 106 uname -a
Linux linpc1 3.1.10-1.29-desktop #1 SMP PREEMPT Fri May 31 20:10:04 UTC 2013
(2529847) x86_64 x86_64 x86_64 GNU/Linux
linpc1 fd1026 107 mpiexec -np 1 --host linpc1,linpc1,linpc1,linpc1
spawn_multiple_master
Parent process 0 running on linpc1
I create 3 slave processes.
[linpc1:21502] PMIX ERROR: UNPACK-PAST-END in file
../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server_ops.c
at line 829
[linpc1:21502] PMIX ERROR: UNPACK-PAST-END in file
../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server.c
at line 2176
[linpc1:21507] *** An error occurred in MPI_Comm_spawn_multiple
[linpc1:21507] *** reported by process [1005518849,0]
[linpc1:21507] *** on communicator MPI_COMM_WORLD
[linpc1:21507] *** MPI_ERR_SPAWN: could not spawn processes
[linpc1:21507] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will
now abort,
[linpc1:21507] *** and potentially your MPI job)
linpc1 fd1026 108
I used the following configure command.
../openmpi-v2.x-dev-1290-gbd0e4e1/configure \
--prefix=/usr/local/openmpi-2.0.0_64_gcc \
--libdir=/usr/local/openmpi-2.0.0_64_gcc/lib64 \
--with-jdk-bindir=/usr/local/jdk1.8.0/bin \
--with-jdk-headers=/usr/local/jdk1.8.0/include \
JAVA_HOME=/usr/local/jdk1.8.0 \
LDFLAGS="-m64" CC="gcc" CXX="g++" FC="gfortran" \
CFLAGS="-m64" CXXFLAGS="-m64" FCFLAGS="-m64" \
CPP="cpp" CXXCPP="cpp" \
--enable-mpi-cxx \
--enable-cxx-exceptions \
--enable-mpi-java \
--enable-heterogeneous \
--enable-mpi-thread-multiple \
--with-hwloc=internal \
--without-verbs \
--with-wrapper-cflags="-std=c11 -m64" \
--with-wrapper-cxxflags="-m64" \
--with-wrapper-fcflags="-m64" \
--enable-debug \
|& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
Kind regards
Siegmar
Am 27.04.2016 um 13:21 schrieb Gilles Gouaillardet:
> Siegmar,
>
> please add this to your CFLAGS for the time being.
>
> configure tries to detect which flags must be added for C99 support, and it
> seems
> the test is not working for Solaris 10 and Oracle compilers.
> this is no more a widely used environment, and I am not sure I can find the
> time to fix this
> in a near future.
>
>
> regarding the runtime issue, can you please describe your 4 hosts (os,
> endianness and bitness)
>
> Cheers,
>
> Gilles
>
> On Wednesday, April 27, 2016, Siegmar Gross
> <siegmar.gr...@informatik.hs-fulda.de
> <javascript:_e(%7B%7D,'cvml','siegmar.gr...@informatik.hs-fulda.de');>> wrote:
>
> Hi Gilles,
>
> adding "-std=c99" to CFLAGS solves the problem with the missing library.
> Shall I add it permanently to my configure command or will you add it,
> so that I will not run into problems if you need the C11 standard later?
>
> "spawn_multiple_master" breaks with the same error that I reported
> yesterday for my gcc-version of Open MPI. Hopefully you can solve the
> problem as well.
>
>
> Kind regards and thank you very much for your help
>
> Siegmar
>
>
> Am 27.04.2016 um 08:05 schrieb Gilles Gouaillardet:
>
> Siegmar,
>
>
> here is the error :
>
> configure:17969: cc -o conftest -m64 -D_REENTRANT -g -g
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1
>
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc
>
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1/opal/include
>
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc/opal/include
> -D_REENTRANT
>
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/hwloc/hwloc1112/hwloc/include
>
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc/opal/mca/hwloc/hwloc1112/hwloc/include
>
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/event/libevent2022/libevent
>
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/event/libevent2022/libevent/include
>
> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc/opal/mca/event/libevent2022/libevent/include
> -m64 conftest.c >&5
> "/usr/include/stdbool.h", line 42: #error: "Use of <stdbool.h> is
> valid only
> in a c99 compilation environment."
>
>
> i cannot reproduce this on solaris 11 with oracle studio 5.3 compiler,
> and i
> do not have solaris 10 yet.
>
> could you please re-configure with '-std=c99' appended to your CFLAGS
> and see
> if it helps ?
>
>
> Cheers,
>
>
> Gilles
>
>
> On 4/26/2016 7:57 PM, Siegmar Gross wrote:
>
> Hi Gilles and Ralph,
>
> I was able to sort out my mess. In my last email I compared the
> files from "SunOS_sparc/openmpi-2.0.0_64_gcc/lib64/openmpi" from
> the attachment of my email to Ralph with the files from
> "SunOS_sparc/openmpi-2.0.0_64_cc/lib64/openmpi" from my current
> file system. That's the reason while I have had different
> timestamps. The other problem was that Ralph didn't recognize
> that "mca_pmix_pmix112.so" wasn't built on Solaris with the
> Sun C compiler. I've removed most of the files from the attachment
> of my email so that it is easier to see the relevant files. Below
> I try to give you more information that may be relevant to track
> down the problem. I still get an error running one of my small
> test programs, when I use my gcc-version of Open MPI.
> "mca_pmix_pmix112.so" is a 64 bits library.
>
> Linux_x86_64/openmpi-2.0.0_64_cc/lib64/openmpi:
> ...
> -rwxr-xr-x 1 root root 261327 Apr 19 16:46 mca_plm_slurm.so
> -rwxr-xr-x 1 root root 1002 Apr 19 16:45 mca_pmix_pmix112.la
> <http://mca_pmix_pmix112.la>
> -rwxr-xr-x 1 root root 3906526 Apr 19 16:45 mca_pmix_pmix112.so
> -rwxr-xr-x 1 root root 966 Apr 19 16:51 mca_pml_cm.la
> <http://mca_pml_cm.la>
> -rwxr-xr-x 1 root root 1574265 Apr 19 16:51 mca_pml_cm.so
> ...
>
> Linux_x86_64/openmpi-2.0.0_64_gcc/lib64/openmpi:
> ...
> -rwxr-xr-x 1 root root 70371 Apr 19 16:43 mca_plm_slurm.so
> -rwxr-xr-x 1 root root 1008 Apr 19 16:42 mca_pmix_pmix112.la
> <http://mca_pmix_pmix112.la>
> -rwxr-xr-x 1 root root 1029005 Apr 19 16:42 mca_pmix_pmix112.so
> -rwxr-xr-x 1 root root 972 Apr 19 16:46 mca_pml_cm.la
> <http://mca_pml_cm.la>
> -rwxr-xr-x 1 root root 284858 Apr 19 16:46 mca_pml_cm.so
> ...
>
> SunOS_sparc/openmpi-2.0.0_64_cc/lib64/openmpi:
> ...
> -rwxr-xr-x 1 root root 319816 Apr 19 19:58 mca_plm_rsh.so
> -rwxr-xr-x 1 root root 970 Apr 19 20:00 mca_pml_cm.la
> <http://mca_pml_cm.la>
> -rwxr-xr-x 1 root root 1507440 Apr 19 20:00 mca_pml_cm.so
> ...
>
> SunOS_sparc/openmpi-2.0.0_64_gcc/lib64/openmpi:
> ...
> -rwxr-xr-x 1 root root 153280 Apr 19 19:49 mca_plm_rsh.so
> -rwxr-xr-x 1 root root 1007 Apr 19 19:47 mca_pmix_pmix112.la
> <http://mca_pmix_pmix112.la>
> -rwxr-xr-x 1 root root 1400512 Apr 19 19:47 mca_pmix_pmix112.so
> -rwxr-xr-x 1 root root 971 Apr 19 19:52 mca_pml_cm.la
> <http://mca_pml_cm.la>
> -rwxr-xr-x 1 root root 342440 Apr 19 19:52 mca_pml_cm.so
> ...
>
> SunOS_x86_64/openmpi-2.0.0_64_cc/lib64/openmpi:
> ...
> -rwxr-xr-x 1 root root 300096 Apr 19 17:18 mca_plm_rsh.so
> -rwxr-xr-x 1 root root 970 Apr 19 17:23 mca_pml_cm.la
> <http://mca_pml_cm.la>
> -rwxr-xr-x 1 root root 1458816 Apr 19 17:23 mca_pml_cm.so
> ...
>
> SunOS_x86_64/openmpi-2.0.0_64_gcc/lib64/openmpi:
> ...
> -rwxr-xr-x 1 root root 133096 Apr 19 17:42 mca_plm_rsh.so
> -rwxr-xr-x 1 root root 1007 Apr 19 17:41 mca_pmix_pmix112.la
> <http://mca_pmix_pmix112.la>
> -rwxr-xr-x 1 root root 1320240 Apr 19 17:41 mca_pmix_pmix112.so
> -rwxr-xr-x 1 root root 971 Apr 19 17:46 mca_pml_cm.la
> <http://mca_pml_cm.la>
> -rwxr-xr-x 1 root root 419848 Apr 19 17:46 mca_pml_cm.so
> ...
>
>
> Yesterday I've installed openmpi-v2.x-dev-1290-gbd0e4e1 so that we
> have a current version for the investigation of the problem. Once
> more mca_pmix_pmix112.so isn't available on Solaris if I use the
> Sun C compiler.
>
> "config.log" for gcc-5.1.0 shows the following.
>
> ...
> configure:127799: /bin/bash
>
> '../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/
> pmix/configure' succeeded for opal/mca/pmix/pmix112/pmix
> configure:127916: checking if MCA component pmix:pmix112 can
> compile
> configure:127918: result: yes
> configure:5637: --- MCA component pmix:external (m4 configuration
> macro)
> configure:128523: checking for MCA component pmix:external compile
> mode
> configure:128529: result: dso
> configure:129054: checking if MCA component pmix:external can
> compile
> configure:129056: result: no
> ...
> config.status:3897: creating opal/mca/pmix/Makefile
> config.status:3897: creating opal/mca/pmix/s1/Makefile
> config.status:3897: creating opal/mca/pmix/cray/Makefile
> config.status:3897: creating opal/mca/pmix/s2/Makefile
> config.status:3897: creating opal/mca/pmix/pmix112/Makefile
> config.status:3897: creating opal/mca/pmix/external/Makefile
> ...
> MCA_BUILD_opal_pmix_cray_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_cray_DSO_TRUE=''
> MCA_BUILD_opal_pmix_external_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_external_DSO_TRUE=''
> MCA_BUILD_opal_pmix_pmix112_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_pmix112_DSO_TRUE=''
> MCA_BUILD_opal_pmix_s1_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_s1_DSO_TRUE=''
> MCA_BUILD_opal_pmix_s2_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_s2_DSO_TRUE=''
> ...
> MCA_opal_FRAMEWORKS='common allocator backtrace btl dl event
> hwloc if
> installdirs memchecker memcpy memory mpool pmix pstat rcache sec
> shmem timer'
> MCA_opal_FRAMEWORKS_SUBDIRS='mca/common mca/allocator
> mca/backtrace mca/btl
> mca/dl mca/event mca/hwloc mca/if mca/installdirs mca/memchecker
> mca/memcpy
> mca/memory mca/mpool mca/pmix mca/pstat mca/rcache mca/sec
> mca/shmem mca/timer'
>
> MCA_opal_FRAMEWORK_COMPONENT_ALL_SUBDIRS='$(MCA_opal_common_ALL_SUBDIRS)
> $(MCA_opal_allocator_ALL_SUBDIRS)
> $(MCA_opal_backtrace_ALL_SUBDIRS)
> $(MCA_opal_btl_ALL_SUBDIRS) $(MCA_opal_dl_ALL_SUBDIRS)
> $(MCA_opal_event_ALL_SUBDIRS) $(MCA_opal_hwloc_ALL_SUBDIRS)
> $(MCA_opal_if_ALL_SUBDIRS) $(MCA_opal_installdirs_ALL_SUBDIRS)
> $(MCA_opal_memchecker_ALL_SUBDIRS) $(MCA_opal_memcpy_ALL_SUBDIRS)
> $(MCA_opal_memory_ALL_SUBDIRS) $(MCA_opal_mpool_ALL_SUBDIRS)
> $(MCA_opal_pmix_ALL_SUBDIRS) $(MCA_opal_pstat_ALL_SUBDIRS)
> $(MCA_opal_rcache_ALL_SUBDIRS) $(MCA_opal_sec_ALL_SUBDIRS)
> $(MCA_opal_shmem_ALL_SUBDIRS) $(MCA_opal_timer_ALL_SUBDIRS)'
>
> MCA_opal_FRAMEWORK_COMPONENT_DSO_SUBDIRS='$(MCA_opal_common_DSO_SUBDIRS)
> $(MCA_opal_allocator_DSO_SUBDIRS)
> $(MCA_opal_backtrace_DSO_SUBDIRS)
> $(MCA_opal_btl_DSO_SUBDIRS) $(MCA_opal_dl_DSO_SUBDIRS)
> $(MCA_opal_event_DSO_SUBDIRS) $(MCA_opal_hwloc_DSO_SUBDIRS)
> $(MCA_opal_if_DSO_SUBDIRS) $(MCA_opal_installdirs_DSO_SUBDIRS)
> $(MCA_opal_memchecker_DSO_SUBDIRS) $(MCA_opal_memcpy_DSO_SUBDIRS)
> $(MCA_opal_memory_DSO_SUBDIRS) $(MCA_opal_mpool_DSO_SUBDIRS)
> $(MCA_opal_pmix_DSO_SUBDIRS) $(MCA_opal_pstat_DSO_SUBDIRS)
> $(MCA_opal_rcache_DSO_SUBDIRS) $(MCA_opal_sec_DSO_SUBDIRS)
> $(MCA_opal_shmem_DSO_SUBDIRS) $(MCA_opal_timer_DSO_SUBDIRS)'
>
> MCA_opal_FRAMEWORK_COMPONENT_STATIC_SUBDIRS='$(MCA_opal_common_STATIC_SUBDIRS)
> $(MCA_opal_allocator_STATIC_SUBDIRS)
> $(MCA_opal_backtrace_STATIC_SUBDIRS)
> $(MCA_opal_btl_STATIC_SUBDIRS) $(MCA_opal_dl_STATIC_SUBDIRS)
> $(MCA_opal_event_STATIC_SUBDIRS) $(MCA_opal_hwloc_STATIC_SUBDIRS)
> $(MCA_opal_if_STATIC_SUBDIRS)
> $(MCA_opal_installdirs_STATIC_SUBDIRS)
> $(MCA_opal_memchecker_STATIC_SUBDIRS)
> $(MCA_opal_memcpy_STATIC_SUBDIRS)
> $(MCA_opal_memory_STATIC_SUBDIRS) $(MCA_opal_mpool_STATIC_SUBDIRS)
> $(MCA_opal_pmix_STATIC_SUBDIRS) $(MCA_opal_pstat_STATIC_SUBDIRS)
> $(MCA_opal_rcache_STATIC_SUBDIRS) $(MCA_opal_sec_STATIC_SUBDIRS)
> $(MCA_opal_shmem_STATIC_SUBDIRS) $(MCA_opal_timer_STATIC_SUBDIRS)'
> MCA_opal_FRAMEWORK_LIBS=' $(MCA_opal_common_STATIC_LTLIBS)
> mca/allocator/libmca_allocator.la <http://libmca_allocator.la>
> $(MCA_opal_allocator_STATIC_LTLIBS)
> mca/backtrace/libmca_backtrace.la <http://libmca_backtrace.la>
> $(MCA_opal_backtrace_STATIC_LTLIBS)
> mca/btl/libmca_btl.la <http://libmca_btl.la>
> $(MCA_opal_btl_STATIC_LTLIBS) mca/dl/libmca_dl.la
> <http://libmca_dl.la>
> $(MCA_opal_dl_STATIC_LTLIBS) mca/event/libmca_event.la
> <http://libmca_event.la>
> $(MCA_opal_event_STATIC_LTLIBS) mca/hwloc/libmca_hwloc.la
> <http://libmca_hwloc.la>
> $(MCA_opal_hwloc_STATIC_LTLIBS) mca/if/libmca_if.la
> <http://libmca_if.la>
> $(MCA_opal_if_STATIC_LTLIBS) mca/installdirs/libmca_installdirs.la
> <http://libmca_installdirs.la>
> $(MCA_opal_installdirs_STATIC_LTLIBS)
> mca/memchecker/libmca_memchecker.la <http://libmca_memchecker.la>
> $(MCA_opal_memchecker_STATIC_LTLIBS) mca/memcpy/libmca_memcpy.la
> <http://libmca_memcpy.la>
> $(MCA_opal_memcpy_STATIC_LTLIBS) mca/memory/libmca_memory.la
> <http://libmca_memory.la>
> $(MCA_opal_memory_STATIC_LTLIBS) mca/mpool/libmca_mpool.la
> <http://libmca_mpool.la>
> $(MCA_opal_mpool_STATIC_LTLIBS) mca/pmix/libmca_pmix.la
> <http://libmca_pmix.la>
> $(MCA_opal_pmix_STATIC_LTLIBS) mca/pstat/libmca_pstat.la
> <http://libmca_pstat.la>
> $(MCA_opal_pstat_STATIC_LTLIBS) mca/rcache/libmca_rcache.la
> <http://libmca_rcache.la>
> $(MCA_opal_rcache_STATIC_LTLIBS) mca/sec/libmca_sec.la
> <http://libmca_sec.la>
> $(MCA_opal_sec_STATIC_LTLIBS) mca/shmem/libmca_shmem.la
> <http://libmca_shmem.la>
> $(MCA_opal_shmem_STATIC_LTLIBS) mca/timer/libmca_timer.la
> <http://libmca_timer.la>
> $(MCA_opal_timer_STATIC_LTLIBS)'
> ...
> MCA_opal_pmix_ALL_COMPONENTS=' s1 cray s2 pmix112 external'
> MCA_opal_pmix_ALL_SUBDIRS=' mca/pmix/s1 mca/pmix/cray mca/pmix/s2
> mca/pmix/pmix112 mca/pmix/external'
> MCA_opal_pmix_DSO_COMPONENTS=' pmix112'
> MCA_opal_pmix_DSO_SUBDIRS=' mca/pmix/pmix112'
> MCA_opal_pmix_STATIC_COMPONENTS=''
> MCA_opal_pmix_STATIC_LTLIBS=''
> MCA_opal_pmix_STATIC_SUBDIRS=''
> ...
> opal_pmix_ext_CPPFLAGS=''
> opal_pmix_ext_LDFLAGS=''
> opal_pmix_ext_LIBS=''
>
> opal_pmix_pmix112_CPPFLAGS='-I$(OPAL_TOP_BUILDDIR)/opal/mca/pmix/pmix112/pmix/include/pmix
> -I$(OPAL_TOP_BUILDDIR)/opal/mca/pmix/pmix112/pmix/include
> -I$(OPAL_TOP_BUILDDIR)/opal/mca/pmix/pmix112/pmix
> -I$(OPAL_TOP_SRCDIR)/opal/mca/pmix/pmix112/pmix'
>
> opal_pmix_pmix112_LIBS='$(OPAL_TOP_BUILDDIR)/opal/mca/pmix/pmix112/pmix/libpmix.la
> <http://libpmix.la>'
>
> ...
>
>
>
> "config.log" for Sun C 5.13 shows the following.
>
> ...
> configure:127803: /bin/bash
>
> '../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/
> pmix/configure' *failed* for opal/mca/pmix/pmix112/pmix
> configure:128379: checking if MCA component pmix:pmix112 can
> compile
> configure:128381: result: no
> configure:5637: --- MCA component pmix:external (m4 configuration
> macro)
> configure:128523: checking for MCA component pmix:external compile
> mode
> configure:128529: result: dso
> configure:129054: checking if MCA component pmix:external can
> compile
> configure:129056: result: no
> ...
> config.status:3887: creating opal/mca/pmix/Makefile
> config.status:3887: creating opal/mca/pmix/s1/Makefile
> config.status:3887: creating opal/mca/pmix/cray/Makefile
> config.status:3887: creating opal/mca/pmix/s2/Makefile
> config.status:3887: creating opal/mca/pmix/pmix112/Makefile
> config.status:3887: creating opal/mca/pmix/external/Makefile
> ...
> MCA_BUILD_opal_pmix_cray_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_cray_DSO_TRUE=''
> MCA_BUILD_opal_pmix_external_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_external_DSO_TRUE=''
> MCA_BUILD_opal_pmix_pmix112_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_pmix112_DSO_TRUE=''
> MCA_BUILD_opal_pmix_s1_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_s1_DSO_TRUE=''
> MCA_BUILD_opal_pmix_s2_DSO_FALSE='#'
> MCA_BUILD_opal_pmix_s2_DSO_TRUE=''
> ...
> MCA_opal_FRAMEWORKS='common allocator backtrace btl dl event
> hwloc if
> installdirs memchecker memcpy memory mpool pmix pstat rcache sec
> shmem timer'
> MCA_opal_FRAMEWORKS_SUBDIRS='mca/common mca/allocator
> mca/backtrace mca/btl
> mca/dl mca/event mca/hwloc mca/if mca/installdirs mca/memchecker
> mca/memcpy
> mca/memory mca/mpool mca/pmix mca/pstat mca/rcache mca/sec
> mca/shmem mca/timer'
>
> MCA_opal_FRAMEWORK_COMPONENT_ALL_SUBDIRS='$(MCA_opal_common_ALL_SUBDIRS)
> $(MCA_opal_allocator_ALL_SUBDIRS)
> $(MCA_opal_backtrace_ALL_SUBDIRS)
> $(MCA_opal_btl_ALL_SUBDIRS) $(MCA_opal_dl_ALL_SUBDIRS)
> $(MCA_opal_event_ALL_SUBDIRS) $(MCA_opal_hwloc_ALL_SUBDIRS)
> $(MCA_opal_if_ALL_SUBDIRS) $(MCA_opal_installdirs_ALL_SUBDIRS)
> $(MCA_opal_memchecker_ALL_SUBDIRS) $(MCA_opal_memcpy_ALL_SUBDIRS)
> $(MCA_opal_memory_ALL_SUBDIRS) $(MCA_opal_mpool_ALL_SUBDIRS)
> $(MCA_opal_pmix_ALL_SUBDIRS) $(MCA_opal_pstat_ALL_SUBDIRS)
> $(MCA_opal_rcache_ALL_SUBDIRS) $(MCA_opal_sec_ALL_SUBDIRS)
> $(MCA_opal_shmem_ALL_SUBDIRS) $(MCA_opal_timer_ALL_SUBDIRS)'
>
> MCA_opal_FRAMEWORK_COMPONENT_DSO_SUBDIRS='$(MCA_opal_common_DSO_SUBDIRS)
> $(MCA_opal_allocator_DSO_SUBDIRS)
> $(MCA_opal_backtrace_DSO_SUBDIRS)
> $(MCA_opal_btl_DSO_SUBDIRS) $(MCA_opal_dl_DSO_SUBDIRS)
> $(MCA_opal_event_DSO_SUBDIRS) $(MCA_opal_hwloc_DSO_SUBDIRS)
> $(MCA_opal_if_DSO_SUBDIRS) $(MCA_opal_installdirs_DSO_SUBDIRS)
> $(MCA_opal_memchecker_DSO_SUBDIRS) $(MCA_opal_memcpy_DSO_SUBDIRS)
> $(MCA_opal_memory_DSO_SUBDIRS) $(MCA_opal_mpool_DSO_SUBDIRS)
> $(MCA_opal_pmix_DSO_SUBDIRS) $(MCA_opal_pstat_DSO_SUBDIRS)
> $(MCA_opal_rcache_DSO_SUBDIRS) $(MCA_opal_sec_DSO_SUBDIRS)
> $(MCA_opal_shmem_DSO_SUBDIRS) $(MCA_opal_timer_DSO_SUBDIRS)'
>
> MCA_opal_FRAMEWORK_COMPONENT_STATIC_SUBDIRS='$(MCA_opal_common_STATIC_SUBDIRS)
> $(MCA_opal_allocator_STATIC_SUBDIRS)
> $(MCA_opal_backtrace_STATIC_SUBDIRS)
> $(MCA_opal_btl_STATIC_SUBDIRS) $(MCA_opal_dl_STATIC_SUBDIRS)
> $(MCA_opal_event_STATIC_SUBDIRS) $(MCA_opal_hwloc_STATIC_SUBDIRS)
> $(MCA_opal_if_STATIC_SUBDIRS)
> $(MCA_opal_installdirs_STATIC_SUBDIRS)
> $(MCA_opal_memchecker_STATIC_SUBDIRS)
> $(MCA_opal_memcpy_STATIC_SUBDIRS)
> $(MCA_opal_memory_STATIC_SUBDIRS) $(MCA_opal_mpool_STATIC_SUBDIRS)
> $(MCA_opal_pmix_STATIC_SUBDIRS) $(MCA_opal_pstat_STATIC_SUBDIRS)
> $(MCA_opal_rcache_STATIC_SUBDIRS) $(MCA_opal_sec_STATIC_SUBDIRS)
> $(MCA_opal_shmem_STATIC_SUBDIRS) $(MCA_opal_timer_STATIC_SUBDIRS)'
> MCA_opal_FRAMEWORK_LIBS=' $(MCA_opal_common_STATIC_LTLIBS)
> mca/allocator/libmca_allocator.la <http://libmca_allocator.la>
> $(MCA_opal_allocator_STATIC_LTLIBS)
> mca/backtrace/libmca_backtrace.la <http://libmca_backtrace.la>
> $(MCA_opal_backtrace_STATIC_LTLIBS)
> mca/btl/libmca_btl.la <http://libmca_btl.la>
> $(MCA_opal_btl_STATIC_LTLIBS) mca/dl/libmca_dl.la
> <http://libmca_dl.la>
> $(MCA_opal_dl_STATIC_LTLIBS) mca/event/libmca_event.la
> <http://libmca_event.la>
> $(MCA_opal_event_STATIC_LTLIBS) mca/hwloc/libmca_hwloc.la
> <http://libmca_hwloc.la>
> $(MCA_opal_hwloc_STATIC_LTLIBS) mca/if/libmca_if.la
> <http://libmca_if.la>
> $(MCA_opal_if_STATIC_LTLIBS) mca/installdirs/libmca_installdirs.la
> <http://libmca_installdirs.la>
> $(MCA_opal_installdirs_STATIC_LTLIBS)
> mca/memchecker/libmca_memchecker.la <http://libmca_memchecker.la>
> $(MCA_opal_memchecker_STATIC_LTLIBS) mca/memcpy/libmca_memcpy.la
> <http://libmca_memcpy.la>
> $(MCA_opal_memcpy_STATIC_LTLIBS) mca/memory/libmca_memory.la
> <http://libmca_memory.la>
> $(MCA_opal_memory_STATIC_LTLIBS) mca/mpool/libmca_mpool.la
> <http://libmca_mpool.la>
> $(MCA_opal_mpool_STATIC_LTLIBS) mca/pmix/libmca_pmix.la
> <http://libmca_pmix.la>
> $(MCA_opal_pmix_STATIC_LTLIBS) mca/pstat/libmca_pstat.la
> <http://libmca_pstat.la>
> $(MCA_opal_pstat_STATIC_LTLIBS) mca/rcache/libmca_rcache.la
> <http://libmca_rcache.la>
> $(MCA_opal_rcache_STATIC_LTLIBS) mca/sec/libmca_sec.la
> <http://libmca_sec.la>
> $(MCA_opal_sec_STATIC_LTLIBS) mca/shmem/libmca_shmem.la
> <http://libmca_shmem.la>
> $(MCA_opal_shmem_STATIC_LTLIBS) mca/timer/libmca_timer.la
> <http://libmca_timer.la>
> $(MCA_opal_timer_STATIC_LTLIBS)'
> ...
> MCA_opal_pmix_ALL_COMPONENTS=' s1 cray s2 pmix112 external'
> MCA_opal_pmix_ALL_SUBDIRS=' mca/pmix/s1 mca/pmix/cray mca/pmix/s2
> mca/pmix/pmix112 mca/pmix/external'
> MCA_opal_pmix_DSO_COMPONENTS=''
> MCA_opal_pmix_DSO_SUBDIRS=''
> MCA_opal_pmix_STATIC_COMPONENTS=''
> MCA_opal_pmix_STATIC_LTLIBS=''
> MCA_opal_pmix_STATIC_SUBDIRS=''
> ...
> opal_pmix_ext_CPPFLAGS=''
> opal_pmix_ext_LDFLAGS=''
> opal_pmix_ext_LIBS=''
> opal_pmix_pmix112_CPPFLAGS=''
> opal_pmix_pmix112_LIBS=''
> ...
>
>
>
>
> I've attached the config.log files for pmix.
>
> tyr openmpi-2.0.0 142 tar zvft pmix_config.log.tar.gz
> -rw-r--r-- root/root 136291 2016-04-25 08:05:34
>
> openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc/opal/mca/pmix/pmix112/pmix/config.log
> -rw-r--r-- root/root 528808 2016-04-25 08:07:54
>
> openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_gcc/opal/mca/pmix/pmix112/pmix/config.log
> tyr openmpi-2.0.0 143
>
>
>
> I've also attached the output for the broken execution of
> "spawn_multiple_master" for my gcc-version of Open MPI.
> "spawn_master" works as expected with my gcc-version of Open MPI.
>
> Hopefully you can fix the problem.
>
>
> Kind regards and thank you very much for your help
>
> Siegmar
>
>
>
> Am 23.04.2016 um 21:34 schrieb Siegmar Gross:
>
> Hi Gilles,
>
> I don't know what happened, but the files are not available
> now
> and they were definitely available when I answered the email
> from
> Ralph. The files also have a different timestamp now. This is
> an
> extract from my email to Ralph for Solaris Sparc.
>
> -rwxr-xr-x 1 root root 977 Apr 19 19:49 mca_plm_rsh.la
> <http://mca_plm_rsh.la>
> -rwxr-xr-x 1 root root 153280 Apr 19 19:49 mca_plm_rsh.so
> -rwxr-xr-x 1 root root 1007 Apr 19 19:47
> mca_pmix_pmix112.la <http://mca_pmix_pmix112.la>
> -rwxr-xr-x 1 root root 1400512 Apr 19 19:47
> mca_pmix_pmix112.so
> -rwxr-xr-x 1 root root 971 Apr 19 19:52 mca_pml_cm.la
> <http://mca_pml_cm.la>
> -rwxr-xr-x 1 root root 342440 Apr 19 19:52 mca_pml_cm.so
>
> Now I have the following output for these files.
>
> -rwxr-xr-x 1 root root 976 Apr 19 19:58 mca_plm_rsh.la
> <http://mca_plm_rsh.la>
> -rwxr-xr-x 1 root root 319816 Apr 19 19:58 mca_plm_rsh.so
> -rwxr-xr-x 1 root root 970 Apr 19 20:00 mca_pml_cm.la
> <http://mca_pml_cm.la>
> -rwxr-xr-x 1 root root 1507440 Apr 19 20:00 mca_pml_cm.so
>
> I'll try to find out what happened next week when I'm back in
> my office.
>
>
> Kind regards
>
> Siegmar
>
>
>
>
>
> Am 23.04.16 um 02:12 schrieb Gilles Gouaillardet:
>
> Siegmar,
>
> I will try to reproduce this on my solaris11 x86_64 vm
>
> In the mean time, can you please double check
> mca_pmix_pmix_pmix112.so
> is a 64 bits library ?
> (E.g, confirm "-m64" was correctly passed to pmix)
>
> Cheers,
>
> Gilles
>
> On Friday, April 22, 2016, Siegmar Gross
> <siegmar.gr...@informatik.hs-fulda.de
> <mailto:siegmar.gr...@informatik.hs-fulda.de>> wrote:
>
> Hi Ralph,
>
> I've already used "-enable-debug". "SYSTEM_ENV" is
> "SunOS" or
> "Linux" and "MACHINE_ENV" is "sparc" or "x86_84".
>
> mkdir
>
> openmpi-v2.x-dev-1280-gc110ae8-${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc
> cd
>
> openmpi-v2.x-dev-1280-gc110ae8-${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc
>
> ../openmpi-v2.x-dev-1280-gc110ae8/configure \
> --prefix=/usr/local/openmpi-2.0.0_64_gcc \
> --libdir=/usr/local/openmpi-2.0.0_64_gcc/lib64 \
> --with-jdk-bindir=/usr/local/jdk1.8.0/bin \
> --with-jdk-headers=/usr/local/jdk1.8.0/include \
> JAVA_HOME=/usr/local/jdk1.8.0 \
> LDFLAGS="-m64" CC="gcc" CXX="g++" FC="gfortran" \
> CFLAGS="-m64" CXXFLAGS="-m64" FCFLAGS="-m64" \
> CPP="cpp" CXXCPP="cpp" \
> --enable-mpi-cxx \
> --enable-cxx-exceptions \
> --enable-mpi-java \
> --enable-heterogeneous \
> --enable-mpi-thread-multiple \
> --with-hwloc=internal \
> --without-verbs \
> --with-wrapper-cflags="-std=c11 -m64" \
> --with-wrapper-cxxflags="-m64" \
> --with-wrapper-fcflags="-m64" \
> --enable-debug \
> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
>
>
> mkdir
>
> openmpi-v2.x-dev-1280-gc110ae8-${SYSTEM_ENV}.${MACHINE_ENV}.64_cc
> cd
>
> openmpi-v2.x-dev-1280-gc110ae8-${SYSTEM_ENV}.${MACHINE_ENV}.64_cc
>
> ../openmpi-v2.x-dev-1280-gc110ae8/configure \
> --prefix=/usr/local/openmpi-2.0.0_64_cc \
> --libdir=/usr/local/openmpi-2.0.0_64_cc/lib64 \
> --with-jdk-bindir=/usr/local/jdk1.8.0/bin \
> --with-jdk-headers=/usr/local/jdk1.8.0/include \
> JAVA_HOME=/usr/local/jdk1.8.0 \
> LDFLAGS="-m64" CC="cc" CXX="CC" FC="f95" \
> CFLAGS="-m64" CXXFLAGS="-m64 -library=stlport4"
> FCFLAGS="-m64" \
> CPP="cpp" CXXCPP="cpp" \
> --enable-mpi-cxx \
> --enable-cxx-exceptions \
> --enable-mpi-java \
> --enable-heterogeneous \
> --enable-mpi-thread-multiple \
> --with-hwloc=internal \
> --without-verbs \
> --with-wrapper-cflags="-m64" \
> --with-wrapper-cxxflags="-m64 -library=stlport4" \
> --with-wrapper-fcflags="-m64" \
> --with-wrapper-ldflags="" \
> --enable-debug \
> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_cc
>
>
> Kind regards
>
> Siegmar
>
> Am 21.04.2016 um 18:18 schrieb Ralph Castain:
>
> Can you please rebuild OMPI with -enable-debug in
> the configure
> cmd? It will let us see more error output
>
>
> On Apr 21, 2016, at 8:52 AM, Siegmar Gross
> <siegmar.gr...@informatik.hs-fulda.de> wrote:
>
> Hi Ralph,
>
> I don't see any additional information.
>
> tyr hello_1 108 mpiexec -np 4 --host
> tyr,sunpc1,linpc1,ruester -mca
> mca_base_component_show_load_errors 1
> hello_1_mpi
> [tyr.informatik.hs-fulda.de:06211
> <http://tyr.informatik.hs-fulda.de:06211>
> <http://tyr.informatik.hs-fulda.de:06211>]
> [[48741,0],0]
> ORTE_ERROR_LOG: Not found in file
>
>
> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>
> at line 638
>
>
> --------------------------------------------------------------------------
> It looks like orte_init failed for some
> reason; your
> parallel process is
> likely to abort. There are many reasons that
> a parallel
> process can
> fail during orte_init; some of which are due
> to configuration or
> environment problems. This failure appears to
> be an
> internal failure;
> here's some additional information (which may
> only be
> relevant to an
> Open MPI developer):
>
> opal_pmix_base_select failed
> --> Returned value Not found (-13) instead of
> ORTE_SUCCESS
>
>
> --------------------------------------------------------------------------
>
>
> tyr hello_1 109 mpiexec -np 4 --host
> tyr,sunpc1,linpc1,ruester -mca
> mca_base_component_show_load_errors 1 -mca
> pmix_base_verbose
> 10 -mca pmix_server_verbose 5 hello_1_mpi
> [tyr.informatik.hs-fulda.de:06212
> <http://tyr.informatik.hs-fulda.de:06212>
> <http://tyr.informatik.hs-fulda.de:06212>]
> mca: base:
> components_register: registering framework
> pmix components
> [tyr.informatik.hs-fulda.de:06212
> <http://tyr.informatik.hs-fulda.de:06212>
> <http://tyr.informatik.hs-fulda.de:06212>]
> mca: base:
> components_open: opening pmix components
> [tyr.informatik.hs-fulda.de:06212
> <http://tyr.informatik.hs-fulda.de:06212>
> <http://tyr.informatik.hs-fulda.de:06212>]
> mca:base:select:
> Auto-selecting pmix components
> [tyr.informatik.hs-fulda.de:06212
> <http://tyr.informatik.hs-fulda.de:06212>
> <http://tyr.informatik.hs-fulda.de:06212>]
> mca:base:select:(
> pmix) No component selected!
> [tyr.informatik.hs-fulda.de:06212
> <http://tyr.informatik.hs-fulda.de:06212>
> <http://tyr.informatik.hs-fulda.de:06212>]
> [[48738,0],0]
> ORTE_ERROR_LOG: Not found in file
>
>
> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>
> at line 638
>
>
> --------------------------------------------------------------------------
> It looks like orte_init failed for some
> reason; your
> parallel process is
> likely to abort. There are many reasons that
> a parallel
> process can
> fail during orte_init; some of which are due
> to configuration or
> environment problems. This failure appears to
> be an
> internal failure;
> here's some additional information (which may
> only be
> relevant to an
> Open MPI developer):
>
> opal_pmix_base_select failed
> --> Returned value Not found (-13) instead of
> ORTE_SUCCESS
>
>
> --------------------------------------------------------------------------
> tyr hello_1 110
>
>
> Kind regards
>
> Siegmar
>
>
> Am 21.04.2016 um 17:24 schrieb Ralph Castain:
>
> Hmmm?it looks like you built the right
> components, but
> they are not being picked up. Can you run
> your mpiexec
> command again, adding ?-mca
> mca_base_component_show_load_errors 1? to
> the cmd line?
>
>
> On Apr 21, 2016, at 8:16 AM, Siegmar
> Gross
> <siegmar.gr...@informatik.hs-fulda.de>
> wrote:
>
> Hi Ralph,
>
> I have attached ompi_info output for
> both compilers
> from my
> sparc machine and the listings for
> both compilers
> from the
> <prefix>/lib/openmpi directories.
> Hopefully that
> helps to
> find the problem.
>
> hermes tmp 3 tar zvft
> openmpi-2.x_info.tar.gz
> -rw-r--r-- root/root 10969
> 2016-04-21 17:06
> ompi_info_SunOS_sparc_cc.txt
> -rw-r--r-- root/root 11044
> 2016-04-21 17:06
> ompi_info_SunOS_sparc_gcc.txt
> -rw-r--r-- root/root 71252
> 2016-04-21 17:02
> lib64_openmpi.txt
> hermes tmp 4
>
>
> Kind regards and thank you very much
> once more for
> your help
>
> Siegmar
>
>
> Am 21.04.2016 um 15:54 schrieb Ralph
> Castain:
>
> Odd - it would appear that none of
> the pmix
> components built? Can you send
> along the output from ompi_info?
> Or just send a
> listing of the files in the
> <prefix>/lib/openmpi directory?
>
>
> On Apr 21, 2016, at 1:27 AM,
> Siegmar Gross
>
> <siegmar.gr...@informatik.hs-fulda.de
>
> <mailto:siegmar.gr...@informatik.hs-fulda.de>>
> wrote:
>
> Hi Ralph,
>
> Am 21.04.2016 um 00:18 schrieb
> Ralph Castain:
>
> Could you please rerun
> these test and
> add ?-mca
> pmix_base_verbose 10
> -mca pmix_server_verbose
> 5? to your cmd
> line? I need to see why
> the
> pmix components failed.
>
>
>
> tyr spawn 111 mpiexec -np 1
> --host
> tyr,sunpc1,linpc1,ruester -mca
> pmix_base_verbose 10 -mca
> pmix_server_verbose 5
> spawn_multiple_master
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:26652] mca:
> base: components_register:
> registering
> framework pmix components
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:26652] mca:
> base: components_open: opening
> pmix components
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:26652]
> mca:base:select:
> Auto-selecting pmix components
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:26652]
> mca:base:select:( pmix) No
> component selected!
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:26652]
> [[52794,0],0] ORTE_ERROR_LOG:
> Not found in file
>
>
> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>
> at line 638
>
>
> --------------------------------------------------------------------------
> It looks like orte_init failed
> for some
> reason; your parallel process
> is
> likely to abort. There are
> many reasons
> that a parallel process can
> fail during orte_init; some of
> which are due
> to configuration or
> environment problems. This
> failure appears
> to be an internal failure;
> here's some additional
> information (which
> may only be relevant to an
> Open MPI developer):
>
> opal_pmix_base_select failed
> --> Returned value Not found
> (-13) instead
> of ORTE_SUCCESS
>
>
> --------------------------------------------------------------------------
> tyr spawn 112
>
>
>
>
> tyr hello_1 116 mpiexec -np 1
> --host
> tyr,sunpc1,linpc1,ruester -mca
> pmix_base_verbose 10 -mca
> pmix_server_verbose 5
> hello_1_mpi
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:27261] mca:
> base: components_register:
> registering
> framework pmix components
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:27261] mca:
> base: components_open: opening
> pmix components
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:27261]
> mca:base:select:
> Auto-selecting pmix components
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:27261]
> mca:base:select:( pmix) No
> component selected!
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de/>:27261]
> [[52315,0],0] ORTE_ERROR_LOG:
> Not found in file
>
>
> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>
> at line 638
>
>
> --------------------------------------------------------------------------
> It looks like orte_init failed
> for some
> reason; your parallel process
> is
> likely to abort. There are
> many reasons
> that a parallel process can
> fail during orte_init; some of
> which are due
> to configuration or
> environment problems. This
> failure appears
> to be an internal failure;
> here's some additional
> information (which
> may only be relevant to an
> Open MPI developer):
>
> opal_pmix_base_select failed
> --> Returned value Not found
> (-13) instead
> of ORTE_SUCCESS
>
>
> --------------------------------------------------------------------------
> tyr hello_1 117
>
>
>
> Thank you very much for your
> help.
>
>
> Kind regards
>
> Siegmar
>
>
>
>
> Thanks
> Ralph
>
> On Apr 20, 2016, at
> 10:12 AM,
> Siegmar Gross
>
> <siegmar.gr...@informatik.hs-fulda.de
>
> <mailto:siegmar.gr...@informatik.hs-fulda.de>>
> wrote:
>
> Hi,
>
> I have built
>
> openmpi-v2.x-dev-1280-gc110ae8 on my
> machines
> (Solaris 10 Sparc,
> Solaris 10
> x86_64, and openSUSE
> Linux
> 12.1 x86_64) with
> gcc-5.1.0 and Sun
> C 5.13. Unfortunately
> I get
> runtime errors for
> some programs.
>
>
> Sun C 5.13:
> ===========
>
> For all my test
> programs I get the
> same error on Solaris
> Sparc and
> Solaris x86_64, while
> the programs
> work fine on Linux.
>
> tyr hello_1 115
> mpiexec -np 2
> hello_1_mpi
>
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>:22373]
> [[61763,0],0]
> ORTE_ERROR_LOG: Not
> found in file
>
>
> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>
> at line 638
>
>
> --------------------------------------------------------------------------
> It looks like
> orte_init failed for
> some reason; your
> parallel process is
> likely to abort.
> There are many
> reasons that a
> parallel process can
> fail during orte_init;
> some of which
> are due to
> configuration or
> environment problems.
> This failure
> appears to be an
> internal failure;
> here's some additional
> information
> (which may only be
> relevant to an
> Open MPI developer):
>
> opal_pmix_base_select
> failed
> --> Returned value Not
> found (-13)
> instead of
> ORTE_SUCCESS
>
>
> --------------------------------------------------------------------------
> tyr hello_1 116
>
>
>
>
> GCC-5.1.0:
> ==========
>
> tyr spawn 121 mpiexec
> -np 1 --host
>
> tyr,sunpc1,linpc1,ruester
> spawn_multiple_master
>
> Parent process 0
> running on
>
> tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
> I create 3 slave
> processes.
>
>
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>:25366]
> PMIX ERROR:
> UNPACK-PAST-END in file
>
>
> ../../../../../../openmpi-v2.x-dev-1280-gc110ae8/opal/mca/pmix/pmix112/pmix/src/server/pmix_server_ops.c
>
>
> at line 829
>
> [tyr.informatik.hs-fulda.de
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>
>
> <http://tyr.informatik.hs-fulda.de>:25366]
> PMIX ERROR:
> UNPACK-PAST-END in file
>
>
> ../../../../../../openmpi-v2.x-dev-1280-gc110ae8/opal/mca/pmix/pmix112/pmix/src/server/pmix_server.c
>
>
> at line 2176
> [tyr:25377] *** An
> error occurred in
>
> MPI_Comm_spawn_multiple
> [tyr:25377] ***
> reported by process
> [3308257281,0]
> [tyr:25377] *** on
> communicator
> MPI_COMM_WORLD
> [tyr:25377] ***
> MPI_ERR_SPAWN: could
> not spawn processes
> [tyr:25377] ***
> MPI_ERRORS_ARE_FATAL
> (processes in this
> communicator will
> now abort,
> [tyr:25377] *** and
> potentially
> your MPI job)
> tyr spawn 122
>
>
> I would be grateful if
> somebody can
> fix the problems.
> Thank you very
> much for any help in
> advance.
>
>
> Kind regards
>
> Siegmar
>
>
> <hello_1_mpi.c><spawn_multiple_master.c>_______________________________________________
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------------------------------
Message: 2
List-Post: users@lists.open-mpi.org
Date: Thu, 28 Apr 2016 10:34:09 +0900
From: Gilles Gouaillardet <gil...@rist.or.jp>
To: Open MPI Users <us...@open-mpi.org>
Subject: Re: [OMPI users] runtime errors for
openmpi-v2.x-dev-1280-gc110ae8
Message-ID: <c173ccda-4979-d90c-a8ae-99f588e26...@rist.or.jp>
Content-Type: text/plain; charset="windows-1252"; Format="flowed"
Siegmar,
can you please also post the source of spawn_slave ?
Cheers,
Gilles
On 4/28/2016 1:17 AM, Siegmar Gross wrote:
> Hi Gilles,
>
> it is not necessary to have a heterogeneous environment to reproduce
> the error as you can see below. All machines are 64 bit.
>
> tyr spawn 119 ompi_info | grep -e "OPAL repo revision" -e "C compiler
> absolute"
> OPAL repo revision: v2.x-dev-1290-gbd0e4e1
> C compiler absolute: /usr/local/gcc-5.1.0/bin/gcc
> tyr spawn 120 uname -a
> SunOS tyr.informatik.hs-fulda.de 5.10 Generic_150400-11 sun4u sparc
> SUNW,A70 Solaris
> tyr spawn 121 mpiexec -np 1 --host tyr,tyr,tyr,tyr spawn_multiple_master
>
> Parent process 0 running on tyr.informatik.hs-fulda.de
> I create 3 slave processes.
>
> [tyr.informatik.hs-fulda.de:27286] PMIX ERROR: UNPACK-PAST-END in file
> ../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server_ops.c
>
> at line 829
> [tyr.informatik.hs-fulda.de:27286] PMIX ERROR: UNPACK-PAST-END in file
> ../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server.c
>
> at line 2176
> [tyr:27288] *** An error occurred in MPI_Comm_spawn_multiple
> [tyr:27288] *** reported by process [3434086401,0]
> [tyr:27288] *** on communicator MPI_COMM_WORLD
> [tyr:27288] *** MPI_ERR_SPAWN: could not spawn processes
> [tyr:27288] *** MPI_ERRORS_ARE_FATAL (processes in this communicator
> will now abort,
> [tyr:27288] *** and potentially your MPI job)
> tyr spawn 122
>
>
>
>
>
>
> sunpc1 fd1026 105 ompi_info | grep -e "OPAL repo revision" -e "C
> compiler absolute"
> OPAL repo revision: v2.x-dev-1290-gbd0e4e1
> C compiler absolute: /usr/local/gcc-5.1.0/bin/gcc
> sunpc1 fd1026 106 uname -a
> SunOS sunpc1 5.10 Generic_147441-21 i86pc i386 i86pc Solaris
> sunpc1 fd1026 107 mpiexec -np 1 --host sunpc1,sunpc1,sunpc1,sunpc1
> spawn_multiple_master
>
> Parent process 0 running on sunpc1
> I create 3 slave processes.
>
> [sunpc1:00368] PMIX ERROR: UNPACK-PAST-END in file
> ../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server_ops.c
>
> at line 829
> [sunpc1:00368] PMIX ERROR: UNPACK-PAST-END in file
> ../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server.c
>
> at line 2176
> [sunpc1:370] *** An error occurred in MPI_Comm_spawn_multiple
> [sunpc1:370] *** reported by process [43909121,0]
> [sunpc1:370] *** on communicator MPI_COMM_WORLD
> [sunpc1:370] *** MPI_ERR_SPAWN: could not spawn processes
> [sunpc1:370] *** MPI_ERRORS_ARE_FATAL (processes in this communicator
> will now abort,
> [sunpc1:370] *** and potentially your MPI job)
> sunpc1 fd1026 108
>
>
>
>
>
> linpc1 fd1026 105 ompi_info | grep -e "OPAL repo revision" -e "C
> compiler absolute"
> OPAL repo revision: v2.x-dev-1290-gbd0e4e1
> C compiler absolute: /usr/local/gcc-5.1.0/bin/gcc
> linpc1 fd1026 106 uname -a
> Linux linpc1 3.1.10-1.29-desktop #1 SMP PREEMPT Fri May 31 20:10:04
> UTC 2013 (2529847) x86_64 x86_64 x86_64 GNU/Linux
> linpc1 fd1026 107 mpiexec -np 1 --host linpc1,linpc1,linpc1,linpc1
> spawn_multiple_master
>
> Parent process 0 running on linpc1
> I create 3 slave processes.
>
> [linpc1:21502] PMIX ERROR: UNPACK-PAST-END in file
> ../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server_ops.c
>
> at line 829
> [linpc1:21502] PMIX ERROR: UNPACK-PAST-END in file
> ../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/pmix/src/server/pmix_server.c
>
> at line 2176
> [linpc1:21507] *** An error occurred in MPI_Comm_spawn_multiple
> [linpc1:21507] *** reported by process [1005518849,0]
> [linpc1:21507] *** on communicator MPI_COMM_WORLD
> [linpc1:21507] *** MPI_ERR_SPAWN: could not spawn processes
> [linpc1:21507] *** MPI_ERRORS_ARE_FATAL (processes in this
> communicator will now abort,
> [linpc1:21507] *** and potentially your MPI job)
> linpc1 fd1026 108
>
>
> I used the following configure command.
>
> ../openmpi-v2.x-dev-1290-gbd0e4e1/configure \
> --prefix=/usr/local/openmpi-2.0.0_64_gcc \
> --libdir=/usr/local/openmpi-2.0.0_64_gcc/lib64 \
> --with-jdk-bindir=/usr/local/jdk1.8.0/bin \
> --with-jdk-headers=/usr/local/jdk1.8.0/include \
> JAVA_HOME=/usr/local/jdk1.8.0 \
> LDFLAGS="-m64" CC="gcc" CXX="g++" FC="gfortran" \
> CFLAGS="-m64" CXXFLAGS="-m64" FCFLAGS="-m64" \
> CPP="cpp" CXXCPP="cpp" \
> --enable-mpi-cxx \
> --enable-cxx-exceptions \
> --enable-mpi-java \
> --enable-heterogeneous \
> --enable-mpi-thread-multiple \
> --with-hwloc=internal \
> --without-verbs \
> --with-wrapper-cflags="-std=c11 -m64" \
> --with-wrapper-cxxflags="-m64" \
> --with-wrapper-fcflags="-m64" \
> --enable-debug \
> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
>
>
> Kind regards
>
> Siegmar
>
>
>
> Am 27.04.2016 um 13:21 schrieb Gilles Gouaillardet:
>> Siegmar,
>>
>> please add this to your CFLAGS for the time being.
>>
>> configure tries to detect which flags must be added for C99 support,
>> and it seems
>> the test is not working for Solaris 10 and Oracle compilers.
>> this is no more a widely used environment, and I am not sure I can
>> find the
>> time to fix this
>> in a near future.
>>
>>
>> regarding the runtime issue, can you please describe your 4 hosts (os,
>> endianness and bitness)
>>
>> Cheers,
>>
>> Gilles
>>
>> On Wednesday, April 27, 2016, Siegmar Gross
>> <siegmar.gr...@informatik.hs-fulda.de
>> <javascript:_e(%7B%7D,'cvml','siegmar.gr...@informatik.hs-fulda.de');>>
>> wrote:
>>
>> Hi Gilles,
>>
>> adding "-std=c99" to CFLAGS solves the problem with the missing
>> library.
>> Shall I add it permanently to my configure command or will you
>> add it,
>> so that I will not run into problems if you need the C11 standard
>> later?
>>
>> "spawn_multiple_master" breaks with the same error that I reported
>> yesterday for my gcc-version of Open MPI. Hopefully you can solve
>> the
>> problem as well.
>>
>>
>> Kind regards and thank you very much for your help
>>
>> Siegmar
>>
>>
>> Am 27.04.2016 um 08:05 schrieb Gilles Gouaillardet:
>>
>> Siegmar,
>>
>>
>> here is the error :
>>
>> configure:17969: cc -o conftest -m64 -D_REENTRANT -g -g
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1/opal/include
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc/opal/include
>> -D_REENTRANT
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/hwloc/hwloc1112/hwloc/include
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc/opal/mca/hwloc/hwloc1112/hwloc/include
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/event/libevent2022/libevent
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/event/libevent2022/libevent/include
>> -I/export2/src/openmpi-2.0.0/openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc/opal/mca/event/libevent2022/libevent/include
>> -m64 conftest.c >&5
>> "/usr/include/stdbool.h", line 42: #error: "Use of
>> <stdbool.h> is
>> valid only
>> in a c99 compilation environment."
>>
>>
>> i cannot reproduce this on solaris 11 with oracle studio 5.3
>> compiler,
>> and i
>> do not have solaris 10 yet.
>>
>> could you please re-configure with '-std=c99' appended to
>> your CFLAGS
>> and see
>> if it helps ?
>>
>>
>> Cheers,
>>
>>
>> Gilles
>>
>>
>> On 4/26/2016 7:57 PM, Siegmar Gross wrote:
>>
>> Hi Gilles and Ralph,
>>
>> I was able to sort out my mess. In my last email I
>> compared the
>> files from
>> "SunOS_sparc/openmpi-2.0.0_64_gcc/lib64/openmpi" from
>> the attachment of my email to Ralph with the files from
>> "SunOS_sparc/openmpi-2.0.0_64_cc/lib64/openmpi" from my
>> current
>> file system. That's the reason while I have had different
>> timestamps. The other problem was that Ralph didn't
>> recognize
>> that "mca_pmix_pmix112.so" wasn't built on Solaris with the
>> Sun C compiler. I've removed most of the files from the
>> attachment
>> of my email so that it is easier to see the relevant
>> files. Below
>> I try to give you more information that may be relevant
>> to track
>> down the problem. I still get an error running one of my
>> small
>> test programs, when I use my gcc-version of Open MPI.
>> "mca_pmix_pmix112.so" is a 64 bits library.
>>
>> Linux_x86_64/openmpi-2.0.0_64_cc/lib64/openmpi:
>> ...
>> -rwxr-xr-x 1 root root 261327 Apr 19 16:46 mca_plm_slurm.so
>> -rwxr-xr-x 1 root root 1002 Apr 19 16:45
>> mca_pmix_pmix112.la
>> <http://mca_pmix_pmix112.la>
>> -rwxr-xr-x 1 root root 3906526 Apr 19 16:45
>> mca_pmix_pmix112.so
>> -rwxr-xr-x 1 root root 966 Apr 19 16:51 mca_pml_cm.la
>> <http://mca_pml_cm.la>
>> -rwxr-xr-x 1 root root 1574265 Apr 19 16:51 mca_pml_cm.so
>> ...
>>
>> Linux_x86_64/openmpi-2.0.0_64_gcc/lib64/openmpi:
>> ...
>> -rwxr-xr-x 1 root root 70371 Apr 19 16:43 mca_plm_slurm.so
>> -rwxr-xr-x 1 root root 1008 Apr 19 16:42
>> mca_pmix_pmix112.la
>> <http://mca_pmix_pmix112.la>
>> -rwxr-xr-x 1 root root 1029005 Apr 19 16:42
>> mca_pmix_pmix112.so
>> -rwxr-xr-x 1 root root 972 Apr 19 16:46 mca_pml_cm.la
>> <http://mca_pml_cm.la>
>> -rwxr-xr-x 1 root root 284858 Apr 19 16:46 mca_pml_cm.so
>> ...
>>
>> SunOS_sparc/openmpi-2.0.0_64_cc/lib64/openmpi:
>> ...
>> -rwxr-xr-x 1 root root 319816 Apr 19 19:58 mca_plm_rsh.so
>> -rwxr-xr-x 1 root root 970 Apr 19 20:00 mca_pml_cm.la
>> <http://mca_pml_cm.la>
>> -rwxr-xr-x 1 root root 1507440 Apr 19 20:00 mca_pml_cm.so
>> ...
>>
>> SunOS_sparc/openmpi-2.0.0_64_gcc/lib64/openmpi:
>> ...
>> -rwxr-xr-x 1 root root 153280 Apr 19 19:49 mca_plm_rsh.so
>> -rwxr-xr-x 1 root root 1007 Apr 19 19:47
>> mca_pmix_pmix112.la
>> <http://mca_pmix_pmix112.la>
>> -rwxr-xr-x 1 root root 1400512 Apr 19 19:47
>> mca_pmix_pmix112.so
>> -rwxr-xr-x 1 root root 971 Apr 19 19:52 mca_pml_cm.la
>> <http://mca_pml_cm.la>
>> -rwxr-xr-x 1 root root 342440 Apr 19 19:52 mca_pml_cm.so
>> ...
>>
>> SunOS_x86_64/openmpi-2.0.0_64_cc/lib64/openmpi:
>> ...
>> -rwxr-xr-x 1 root root 300096 Apr 19 17:18 mca_plm_rsh.so
>> -rwxr-xr-x 1 root root 970 Apr 19 17:23 mca_pml_cm.la
>> <http://mca_pml_cm.la>
>> -rwxr-xr-x 1 root root 1458816 Apr 19 17:23 mca_pml_cm.so
>> ...
>>
>> SunOS_x86_64/openmpi-2.0.0_64_gcc/lib64/openmpi:
>> ...
>> -rwxr-xr-x 1 root root 133096 Apr 19 17:42 mca_plm_rsh.so
>> -rwxr-xr-x 1 root root 1007 Apr 19 17:41
>> mca_pmix_pmix112.la
>> <http://mca_pmix_pmix112.la>
>> -rwxr-xr-x 1 root root 1320240 Apr 19 17:41
>> mca_pmix_pmix112.so
>> -rwxr-xr-x 1 root root 971 Apr 19 17:46 mca_pml_cm.la
>> <http://mca_pml_cm.la>
>> -rwxr-xr-x 1 root root 419848 Apr 19 17:46 mca_pml_cm.so
>> ...
>>
>>
>> Yesterday I've installed openmpi-v2.x-dev-1290-gbd0e4e1
>> so that we
>> have a current version for the investigation of the
>> problem. Once
>> more mca_pmix_pmix112.so isn't available on Solaris if I
>> use the
>> Sun C compiler.
>>
>> "config.log" for gcc-5.1.0 shows the following.
>>
>> ...
>> configure:127799: /bin/bash
>> '../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/
>> pmix/configure' succeeded for opal/mca/pmix/pmix112/pmix
>> configure:127916: checking if MCA component pmix:pmix112
>> can compile
>> configure:127918: result: yes
>> configure:5637: --- MCA component pmix:external (m4
>> configuration
>> macro)
>> configure:128523: checking for MCA component
>> pmix:external compile
>> mode
>> configure:128529: result: dso
>> configure:129054: checking if MCA component pmix:external
>> can compile
>> configure:129056: result: no
>> ...
>> config.status:3897: creating opal/mca/pmix/Makefile
>> config.status:3897: creating opal/mca/pmix/s1/Makefile
>> config.status:3897: creating opal/mca/pmix/cray/Makefile
>> config.status:3897: creating opal/mca/pmix/s2/Makefile
>> config.status:3897: creating opal/mca/pmix/pmix112/Makefile
>> config.status:3897: creating opal/mca/pmix/external/Makefile
>> ...
>> MCA_BUILD_opal_pmix_cray_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_cray_DSO_TRUE=''
>> MCA_BUILD_opal_pmix_external_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_external_DSO_TRUE=''
>> MCA_BUILD_opal_pmix_pmix112_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_pmix112_DSO_TRUE=''
>> MCA_BUILD_opal_pmix_s1_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_s1_DSO_TRUE=''
>> MCA_BUILD_opal_pmix_s2_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_s2_DSO_TRUE=''
>> ...
>> MCA_opal_FRAMEWORKS='common allocator backtrace btl dl
>> event hwloc if
>> installdirs memchecker memcpy memory mpool pmix pstat
>> rcache sec
>> shmem timer'
>> MCA_opal_FRAMEWORKS_SUBDIRS='mca/common mca/allocator
>> mca/backtrace mca/btl
>> mca/dl mca/event mca/hwloc mca/if mca/installdirs
>> mca/memchecker
>> mca/memcpy
>> mca/memory mca/mpool mca/pmix mca/pstat mca/rcache mca/sec
>> mca/shmem mca/timer'
>> MCA_opal_FRAMEWORK_COMPONENT_ALL_SUBDIRS='$(MCA_opal_common_ALL_SUBDIRS)
>> $(MCA_opal_allocator_ALL_SUBDIRS)
>> $(MCA_opal_backtrace_ALL_SUBDIRS)
>> $(MCA_opal_btl_ALL_SUBDIRS) $(MCA_opal_dl_ALL_SUBDIRS)
>> $(MCA_opal_event_ALL_SUBDIRS) $(MCA_opal_hwloc_ALL_SUBDIRS)
>> $(MCA_opal_if_ALL_SUBDIRS)
>> $(MCA_opal_installdirs_ALL_SUBDIRS)
>> $(MCA_opal_memchecker_ALL_SUBDIRS)
>> $(MCA_opal_memcpy_ALL_SUBDIRS)
>> $(MCA_opal_memory_ALL_SUBDIRS) $(MCA_opal_mpool_ALL_SUBDIRS)
>> $(MCA_opal_pmix_ALL_SUBDIRS) $(MCA_opal_pstat_ALL_SUBDIRS)
>> $(MCA_opal_rcache_ALL_SUBDIRS) $(MCA_opal_sec_ALL_SUBDIRS)
>> $(MCA_opal_shmem_ALL_SUBDIRS) $(MCA_opal_timer_ALL_SUBDIRS)'
>> MCA_opal_FRAMEWORK_COMPONENT_DSO_SUBDIRS='$(MCA_opal_common_DSO_SUBDIRS)
>> $(MCA_opal_allocator_DSO_SUBDIRS)
>> $(MCA_opal_backtrace_DSO_SUBDIRS)
>> $(MCA_opal_btl_DSO_SUBDIRS) $(MCA_opal_dl_DSO_SUBDIRS)
>> $(MCA_opal_event_DSO_SUBDIRS) $(MCA_opal_hwloc_DSO_SUBDIRS)
>> $(MCA_opal_if_DSO_SUBDIRS)
>> $(MCA_opal_installdirs_DSO_SUBDIRS)
>> $(MCA_opal_memchecker_DSO_SUBDIRS)
>> $(MCA_opal_memcpy_DSO_SUBDIRS)
>> $(MCA_opal_memory_DSO_SUBDIRS) $(MCA_opal_mpool_DSO_SUBDIRS)
>> $(MCA_opal_pmix_DSO_SUBDIRS) $(MCA_opal_pstat_DSO_SUBDIRS)
>> $(MCA_opal_rcache_DSO_SUBDIRS) $(MCA_opal_sec_DSO_SUBDIRS)
>> $(MCA_opal_shmem_DSO_SUBDIRS) $(MCA_opal_timer_DSO_SUBDIRS)'
>> MCA_opal_FRAMEWORK_COMPONENT_STATIC_SUBDIRS='$(MCA_opal_common_STATIC_SUBDIRS)
>> $(MCA_opal_allocator_STATIC_SUBDIRS)
>> $(MCA_opal_backtrace_STATIC_SUBDIRS)
>> $(MCA_opal_btl_STATIC_SUBDIRS) $(MCA_opal_dl_STATIC_SUBDIRS)
>> $(MCA_opal_event_STATIC_SUBDIRS)
>> $(MCA_opal_hwloc_STATIC_SUBDIRS)
>> $(MCA_opal_if_STATIC_SUBDIRS)
>> $(MCA_opal_installdirs_STATIC_SUBDIRS)
>> $(MCA_opal_memchecker_STATIC_SUBDIRS)
>> $(MCA_opal_memcpy_STATIC_SUBDIRS)
>> $(MCA_opal_memory_STATIC_SUBDIRS)
>> $(MCA_opal_mpool_STATIC_SUBDIRS)
>> $(MCA_opal_pmix_STATIC_SUBDIRS)
>> $(MCA_opal_pstat_STATIC_SUBDIRS)
>> $(MCA_opal_rcache_STATIC_SUBDIRS)
>> $(MCA_opal_sec_STATIC_SUBDIRS)
>> $(MCA_opal_shmem_STATIC_SUBDIRS)
>> $(MCA_opal_timer_STATIC_SUBDIRS)'
>> MCA_opal_FRAMEWORK_LIBS=' $(MCA_opal_common_STATIC_LTLIBS)
>> mca/allocator/libmca_allocator.la
>> <http://libmca_allocator.la>
>> $(MCA_opal_allocator_STATIC_LTLIBS)
>> mca/backtrace/libmca_backtrace.la
>> <http://libmca_backtrace.la>
>> $(MCA_opal_backtrace_STATIC_LTLIBS)
>> mca/btl/libmca_btl.la <http://libmca_btl.la>
>> $(MCA_opal_btl_STATIC_LTLIBS) mca/dl/libmca_dl.la
>> <http://libmca_dl.la>
>> $(MCA_opal_dl_STATIC_LTLIBS) mca/event/libmca_event.la
>> <http://libmca_event.la>
>> $(MCA_opal_event_STATIC_LTLIBS) mca/hwloc/libmca_hwloc.la
>> <http://libmca_hwloc.la>
>> $(MCA_opal_hwloc_STATIC_LTLIBS) mca/if/libmca_if.la
>> <http://libmca_if.la>
>> $(MCA_opal_if_STATIC_LTLIBS)
>> mca/installdirs/libmca_installdirs.la
>> <http://libmca_installdirs.la>
>> $(MCA_opal_installdirs_STATIC_LTLIBS)
>> mca/memchecker/libmca_memchecker.la
>> <http://libmca_memchecker.la>
>> $(MCA_opal_memchecker_STATIC_LTLIBS)
>> mca/memcpy/libmca_memcpy.la
>> <http://libmca_memcpy.la>
>> $(MCA_opal_memcpy_STATIC_LTLIBS) mca/memory/libmca_memory.la
>> <http://libmca_memory.la>
>> $(MCA_opal_memory_STATIC_LTLIBS) mca/mpool/libmca_mpool.la
>> <http://libmca_mpool.la>
>> $(MCA_opal_mpool_STATIC_LTLIBS) mca/pmix/libmca_pmix.la
>> <http://libmca_pmix.la>
>> $(MCA_opal_pmix_STATIC_LTLIBS) mca/pstat/libmca_pstat.la
>> <http://libmca_pstat.la>
>> $(MCA_opal_pstat_STATIC_LTLIBS) mca/rcache/libmca_rcache.la
>> <http://libmca_rcache.la>
>> $(MCA_opal_rcache_STATIC_LTLIBS) mca/sec/libmca_sec.la
>> <http://libmca_sec.la>
>> $(MCA_opal_sec_STATIC_LTLIBS) mca/shmem/libmca_shmem.la
>> <http://libmca_shmem.la>
>> $(MCA_opal_shmem_STATIC_LTLIBS) mca/timer/libmca_timer.la
>> <http://libmca_timer.la>
>> $(MCA_opal_timer_STATIC_LTLIBS)'
>> ...
>> MCA_opal_pmix_ALL_COMPONENTS=' s1 cray s2 pmix112 external'
>> MCA_opal_pmix_ALL_SUBDIRS=' mca/pmix/s1 mca/pmix/cray
>> mca/pmix/s2
>> mca/pmix/pmix112 mca/pmix/external'
>> MCA_opal_pmix_DSO_COMPONENTS=' pmix112'
>> MCA_opal_pmix_DSO_SUBDIRS=' mca/pmix/pmix112'
>> MCA_opal_pmix_STATIC_COMPONENTS=''
>> MCA_opal_pmix_STATIC_LTLIBS=''
>> MCA_opal_pmix_STATIC_SUBDIRS=''
>> ...
>> opal_pmix_ext_CPPFLAGS=''
>> opal_pmix_ext_LDFLAGS=''
>> opal_pmix_ext_LIBS=''
>> opal_pmix_pmix112_CPPFLAGS='-I$(OPAL_TOP_BUILDDIR)/opal/mca/pmix/pmix112/pmix/include/pmix
>> -I$(OPAL_TOP_BUILDDIR)/opal/mca/pmix/pmix112/pmix/include
>> -I$(OPAL_TOP_BUILDDIR)/opal/mca/pmix/pmix112/pmix
>> -I$(OPAL_TOP_SRCDIR)/opal/mca/pmix/pmix112/pmix'
>> opal_pmix_pmix112_LIBS='$(OPAL_TOP_BUILDDIR)/opal/mca/pmix/pmix112/pmix/libpmix.la
>> <http://libpmix.la>'
>>
>> ...
>>
>>
>>
>> "config.log" for Sun C 5.13 shows the following.
>>
>> ...
>> configure:127803: /bin/bash
>> '../../../../../../openmpi-v2.x-dev-1290-gbd0e4e1/opal/mca/pmix/pmix112/
>> pmix/configure' *failed* for opal/mca/pmix/pmix112/pmix
>> configure:128379: checking if MCA component pmix:pmix112
>> can compile
>> configure:128381: result: no
>> configure:5637: --- MCA component pmix:external (m4
>> configuration
>> macro)
>> configure:128523: checking for MCA component
>> pmix:external compile
>> mode
>> configure:128529: result: dso
>> configure:129054: checking if MCA component pmix:external
>> can compile
>> configure:129056: result: no
>> ...
>> config.status:3887: creating opal/mca/pmix/Makefile
>> config.status:3887: creating opal/mca/pmix/s1/Makefile
>> config.status:3887: creating opal/mca/pmix/cray/Makefile
>> config.status:3887: creating opal/mca/pmix/s2/Makefile
>> config.status:3887: creating opal/mca/pmix/pmix112/Makefile
>> config.status:3887: creating opal/mca/pmix/external/Makefile
>> ...
>> MCA_BUILD_opal_pmix_cray_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_cray_DSO_TRUE=''
>> MCA_BUILD_opal_pmix_external_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_external_DSO_TRUE=''
>> MCA_BUILD_opal_pmix_pmix112_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_pmix112_DSO_TRUE=''
>> MCA_BUILD_opal_pmix_s1_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_s1_DSO_TRUE=''
>> MCA_BUILD_opal_pmix_s2_DSO_FALSE='#'
>> MCA_BUILD_opal_pmix_s2_DSO_TRUE=''
>> ...
>> MCA_opal_FRAMEWORKS='common allocator backtrace btl dl
>> event hwloc if
>> installdirs memchecker memcpy memory mpool pmix pstat
>> rcache sec
>> shmem timer'
>> MCA_opal_FRAMEWORKS_SUBDIRS='mca/common mca/allocator
>> mca/backtrace mca/btl
>> mca/dl mca/event mca/hwloc mca/if mca/installdirs
>> mca/memchecker
>> mca/memcpy
>> mca/memory mca/mpool mca/pmix mca/pstat mca/rcache mca/sec
>> mca/shmem mca/timer'
>> MCA_opal_FRAMEWORK_COMPONENT_ALL_SUBDIRS='$(MCA_opal_common_ALL_SUBDIRS)
>> $(MCA_opal_allocator_ALL_SUBDIRS)
>> $(MCA_opal_backtrace_ALL_SUBDIRS)
>> $(MCA_opal_btl_ALL_SUBDIRS) $(MCA_opal_dl_ALL_SUBDIRS)
>> $(MCA_opal_event_ALL_SUBDIRS) $(MCA_opal_hwloc_ALL_SUBDIRS)
>> $(MCA_opal_if_ALL_SUBDIRS)
>> $(MCA_opal_installdirs_ALL_SUBDIRS)
>> $(MCA_opal_memchecker_ALL_SUBDIRS)
>> $(MCA_opal_memcpy_ALL_SUBDIRS)
>> $(MCA_opal_memory_ALL_SUBDIRS) $(MCA_opal_mpool_ALL_SUBDIRS)
>> $(MCA_opal_pmix_ALL_SUBDIRS) $(MCA_opal_pstat_ALL_SUBDIRS)
>> $(MCA_opal_rcache_ALL_SUBDIRS) $(MCA_opal_sec_ALL_SUBDIRS)
>> $(MCA_opal_shmem_ALL_SUBDIRS) $(MCA_opal_timer_ALL_SUBDIRS)'
>> MCA_opal_FRAMEWORK_COMPONENT_DSO_SUBDIRS='$(MCA_opal_common_DSO_SUBDIRS)
>> $(MCA_opal_allocator_DSO_SUBDIRS)
>> $(MCA_opal_backtrace_DSO_SUBDIRS)
>> $(MCA_opal_btl_DSO_SUBDIRS) $(MCA_opal_dl_DSO_SUBDIRS)
>> $(MCA_opal_event_DSO_SUBDIRS) $(MCA_opal_hwloc_DSO_SUBDIRS)
>> $(MCA_opal_if_DSO_SUBDIRS)
>> $(MCA_opal_installdirs_DSO_SUBDIRS)
>> $(MCA_opal_memchecker_DSO_SUBDIRS)
>> $(MCA_opal_memcpy_DSO_SUBDIRS)
>> $(MCA_opal_memory_DSO_SUBDIRS) $(MCA_opal_mpool_DSO_SUBDIRS)
>> $(MCA_opal_pmix_DSO_SUBDIRS) $(MCA_opal_pstat_DSO_SUBDIRS)
>> $(MCA_opal_rcache_DSO_SUBDIRS) $(MCA_opal_sec_DSO_SUBDIRS)
>> $(MCA_opal_shmem_DSO_SUBDIRS) $(MCA_opal_timer_DSO_SUBDIRS)'
>> MCA_opal_FRAMEWORK_COMPONENT_STATIC_SUBDIRS='$(MCA_opal_common_STATIC_SUBDIRS)
>> $(MCA_opal_allocator_STATIC_SUBDIRS)
>> $(MCA_opal_backtrace_STATIC_SUBDIRS)
>> $(MCA_opal_btl_STATIC_SUBDIRS) $(MCA_opal_dl_STATIC_SUBDIRS)
>> $(MCA_opal_event_STATIC_SUBDIRS)
>> $(MCA_opal_hwloc_STATIC_SUBDIRS)
>> $(MCA_opal_if_STATIC_SUBDIRS)
>> $(MCA_opal_installdirs_STATIC_SUBDIRS)
>> $(MCA_opal_memchecker_STATIC_SUBDIRS)
>> $(MCA_opal_memcpy_STATIC_SUBDIRS)
>> $(MCA_opal_memory_STATIC_SUBDIRS)
>> $(MCA_opal_mpool_STATIC_SUBDIRS)
>> $(MCA_opal_pmix_STATIC_SUBDIRS)
>> $(MCA_opal_pstat_STATIC_SUBDIRS)
>> $(MCA_opal_rcache_STATIC_SUBDIRS)
>> $(MCA_opal_sec_STATIC_SUBDIRS)
>> $(MCA_opal_shmem_STATIC_SUBDIRS)
>> $(MCA_opal_timer_STATIC_SUBDIRS)'
>> MCA_opal_FRAMEWORK_LIBS=' $(MCA_opal_common_STATIC_LTLIBS)
>> mca/allocator/libmca_allocator.la
>> <http://libmca_allocator.la>
>> $(MCA_opal_allocator_STATIC_LTLIBS)
>> mca/backtrace/libmca_backtrace.la
>> <http://libmca_backtrace.la>
>> $(MCA_opal_backtrace_STATIC_LTLIBS)
>> mca/btl/libmca_btl.la <http://libmca_btl.la>
>> $(MCA_opal_btl_STATIC_LTLIBS) mca/dl/libmca_dl.la
>> <http://libmca_dl.la>
>> $(MCA_opal_dl_STATIC_LTLIBS) mca/event/libmca_event.la
>> <http://libmca_event.la>
>> $(MCA_opal_event_STATIC_LTLIBS) mca/hwloc/libmca_hwloc.la
>> <http://libmca_hwloc.la>
>> $(MCA_opal_hwloc_STATIC_LTLIBS) mca/if/libmca_if.la
>> <http://libmca_if.la>
>> $(MCA_opal_if_STATIC_LTLIBS)
>> mca/installdirs/libmca_installdirs.la
>> <http://libmca_installdirs.la>
>> $(MCA_opal_installdirs_STATIC_LTLIBS)
>> mca/memchecker/libmca_memchecker.la
>> <http://libmca_memchecker.la>
>> $(MCA_opal_memchecker_STATIC_LTLIBS)
>> mca/memcpy/libmca_memcpy.la
>> <http://libmca_memcpy.la>
>> $(MCA_opal_memcpy_STATIC_LTLIBS) mca/memory/libmca_memory.la
>> <http://libmca_memory.la>
>> $(MCA_opal_memory_STATIC_LTLIBS) mca/mpool/libmca_mpool.la
>> <http://libmca_mpool.la>
>> $(MCA_opal_mpool_STATIC_LTLIBS) mca/pmix/libmca_pmix.la
>> <http://libmca_pmix.la>
>> $(MCA_opal_pmix_STATIC_LTLIBS) mca/pstat/libmca_pstat.la
>> <http://libmca_pstat.la>
>> $(MCA_opal_pstat_STATIC_LTLIBS) mca/rcache/libmca_rcache.la
>> <http://libmca_rcache.la>
>> $(MCA_opal_rcache_STATIC_LTLIBS) mca/sec/libmca_sec.la
>> <http://libmca_sec.la>
>> $(MCA_opal_sec_STATIC_LTLIBS) mca/shmem/libmca_shmem.la
>> <http://libmca_shmem.la>
>> $(MCA_opal_shmem_STATIC_LTLIBS) mca/timer/libmca_timer.la
>> <http://libmca_timer.la>
>> $(MCA_opal_timer_STATIC_LTLIBS)'
>> ...
>> MCA_opal_pmix_ALL_COMPONENTS=' s1 cray s2 pmix112 external'
>> MCA_opal_pmix_ALL_SUBDIRS=' mca/pmix/s1 mca/pmix/cray
>> mca/pmix/s2
>> mca/pmix/pmix112 mca/pmix/external'
>> MCA_opal_pmix_DSO_COMPONENTS=''
>> MCA_opal_pmix_DSO_SUBDIRS=''
>> MCA_opal_pmix_STATIC_COMPONENTS=''
>> MCA_opal_pmix_STATIC_LTLIBS=''
>> MCA_opal_pmix_STATIC_SUBDIRS=''
>> ...
>> opal_pmix_ext_CPPFLAGS=''
>> opal_pmix_ext_LDFLAGS=''
>> opal_pmix_ext_LIBS=''
>> opal_pmix_pmix112_CPPFLAGS=''
>> opal_pmix_pmix112_LIBS=''
>> ...
>>
>>
>>
>>
>> I've attached the config.log files for pmix.
>>
>> tyr openmpi-2.0.0 142 tar zvft pmix_config.log.tar.gz
>> -rw-r--r-- root/root 136291 2016-04-25 08:05:34
>> openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_cc/opal/mca/pmix/pmix112/pmix/config.log
>> -rw-r--r-- root/root 528808 2016-04-25 08:07:54
>> openmpi-v2.x-dev-1290-gbd0e4e1-SunOS.sparc.64_gcc/opal/mca/pmix/pmix112/pmix/config.log
>> tyr openmpi-2.0.0 143
>>
>>
>>
>> I've also attached the output for the broken execution of
>> "spawn_multiple_master" for my gcc-version of Open MPI.
>> "spawn_master" works as expected with my gcc-version of
>> Open MPI.
>>
>> Hopefully you can fix the problem.
>>
>>
>> Kind regards and thank you very much for your help
>>
>> Siegmar
>>
>>
>>
>> Am 23.04.2016 um 21:34 schrieb Siegmar Gross:
>>
>> Hi Gilles,
>>
>> I don't know what happened, but the files are not
>> available now
>> and they were definitely available when I answered
>> the email from
>> Ralph. The files also have a different timestamp now.
>> This is an
>> extract from my email to Ralph for Solaris Sparc.
>>
>> -rwxr-xr-x 1 root root 977 Apr 19 19:49
>> mca_plm_rsh.la
>> <http://mca_plm_rsh.la>
>> -rwxr-xr-x 1 root root 153280 Apr 19 19:49
>> mca_plm_rsh.so
>> -rwxr-xr-x 1 root root 1007 Apr 19 19:47
>> mca_pmix_pmix112.la <http://mca_pmix_pmix112.la>
>> -rwxr-xr-x 1 root root 1400512 Apr 19 19:47
>> mca_pmix_pmix112.so
>> -rwxr-xr-x 1 root root 971 Apr 19 19:52
>> mca_pml_cm.la
>> <http://mca_pml_cm.la>
>> -rwxr-xr-x 1 root root 342440 Apr 19 19:52
>> mca_pml_cm.so
>>
>> Now I have the following output for these files.
>>
>> -rwxr-xr-x 1 root root 976 Apr 19 19:58
>> mca_plm_rsh.la
>> <http://mca_plm_rsh.la>
>> -rwxr-xr-x 1 root root 319816 Apr 19 19:58
>> mca_plm_rsh.so
>> -rwxr-xr-x 1 root root 970 Apr 19 20:00
>> mca_pml_cm.la
>> <http://mca_pml_cm.la>
>> -rwxr-xr-x 1 root root 1507440 Apr 19 20:00
>> mca_pml_cm.so
>>
>> I'll try to find out what happened next week when I'm
>> back in
>> my office.
>>
>>
>> Kind regards
>>
>> Siegmar
>>
>>
>>
>>
>>
>> Am 23.04.16 um 02:12 schrieb Gilles Gouaillardet:
>>
>> Siegmar,
>>
>> I will try to reproduce this on my solaris11
>> x86_64 vm
>>
>> In the mean time, can you please double check
>> mca_pmix_pmix_pmix112.so
>> is a 64 bits library ?
>> (E.g, confirm "-m64" was correctly passed to pmix)
>>
>> Cheers,
>>
>> Gilles
>>
>> On Friday, April 22, 2016, Siegmar Gross
>> <siegmar.gr...@informatik.hs-fulda.de
>> <mailto:siegmar.gr...@informatik.hs-fulda.de>> wrote:
>>
>> Hi Ralph,
>>
>> I've already used "-enable-debug".
>> "SYSTEM_ENV" is
>> "SunOS" or
>> "Linux" and "MACHINE_ENV" is "sparc" or
>> "x86_84".
>>
>> mkdir
>> openmpi-v2.x-dev-1280-gc110ae8-${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc
>> cd
>> openmpi-v2.x-dev-1280-gc110ae8-${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc
>>
>> ../openmpi-v2.x-dev-1280-gc110ae8/configure \
>> --prefix=/usr/local/openmpi-2.0.0_64_gcc \
>> --libdir=/usr/local/openmpi-2.0.0_64_gcc/lib64 \
>> --with-jdk-bindir=/usr/local/jdk1.8.0/bin \
>> --with-jdk-headers=/usr/local/jdk1.8.0/include \
>> JAVA_HOME=/usr/local/jdk1.8.0 \
>> LDFLAGS="-m64" CC="gcc" CXX="g++"
>> FC="gfortran" \
>> CFLAGS="-m64" CXXFLAGS="-m64" FCFLAGS="-m64" \
>> CPP="cpp" CXXCPP="cpp" \
>> --enable-mpi-cxx \
>> --enable-cxx-exceptions \
>> --enable-mpi-java \
>> --enable-heterogeneous \
>> --enable-mpi-thread-multiple \
>> --with-hwloc=internal \
>> --without-verbs \
>> --with-wrapper-cflags="-std=c11 -m64" \
>> --with-wrapper-cxxflags="-m64" \
>> --with-wrapper-fcflags="-m64" \
>> --enable-debug \
>> |& tee
>> log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
>>
>>
>> mkdir
>> openmpi-v2.x-dev-1280-gc110ae8-${SYSTEM_ENV}.${MACHINE_ENV}.64_cc
>> cd
>> openmpi-v2.x-dev-1280-gc110ae8-${SYSTEM_ENV}.${MACHINE_ENV}.64_cc
>>
>> ../openmpi-v2.x-dev-1280-gc110ae8/configure \
>> --prefix=/usr/local/openmpi-2.0.0_64_cc \
>> --libdir=/usr/local/openmpi-2.0.0_64_cc/lib64 \
>> --with-jdk-bindir=/usr/local/jdk1.8.0/bin \
>> --with-jdk-headers=/usr/local/jdk1.8.0/include \
>> JAVA_HOME=/usr/local/jdk1.8.0 \
>> LDFLAGS="-m64" CC="cc" CXX="CC" FC="f95" \
>> CFLAGS="-m64" CXXFLAGS="-m64
>> -library=stlport4"
>> FCFLAGS="-m64" \
>> CPP="cpp" CXXCPP="cpp" \
>> --enable-mpi-cxx \
>> --enable-cxx-exceptions \
>> --enable-mpi-java \
>> --enable-heterogeneous \
>> --enable-mpi-thread-multiple \
>> --with-hwloc=internal \
>> --without-verbs \
>> --with-wrapper-cflags="-m64" \
>> --with-wrapper-cxxflags="-m64
>> -library=stlport4" \
>> --with-wrapper-fcflags="-m64" \
>> --with-wrapper-ldflags="" \
>> --enable-debug \
>> |& tee
>> log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_cc
>>
>>
>> Kind regards
>>
>> Siegmar
>>
>> Am 21.04.2016 um 18:18 schrieb Ralph Castain:
>>
>> Can you please rebuild OMPI with
>> -enable-debug in
>> the configure
>> cmd? It will let us see more error output
>>
>>
>> On Apr 21, 2016, at 8:52 AM, Siegmar
>> Gross
>> <siegmar.gr...@informatik.hs-fulda.de> wrote:
>>
>> Hi Ralph,
>>
>> I don't see any additional information.
>>
>> tyr hello_1 108 mpiexec -np 4 --host
>> tyr,sunpc1,linpc1,ruester -mca
>> mca_base_component_show_load_errors 1 hello_1_mpi
>> [tyr.informatik.hs-fulda.de:06211
>> <http://tyr.informatik.hs-fulda.de:06211>
>> <http://tyr.informatik.hs-fulda.de:06211>]
>> [[48741,0],0]
>> ORTE_ERROR_LOG: Not found in file
>>
>> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>>
>> at line 638
>>
>> --------------------------------------------------------------------------
>> It looks like orte_init failed for some
>> reason; your
>> parallel process is
>> likely to abort. There are many
>> reasons that
>> a parallel
>> process can
>> fail during orte_init; some of which
>> are due
>> to configuration or
>> environment problems. This failure
>> appears to
>> be an
>> internal failure;
>> here's some additional information
>> (which may
>> only be
>> relevant to an
>> Open MPI developer):
>>
>> opal_pmix_base_select failed
>> --> Returned value Not found (-13)
>> instead of
>> ORTE_SUCCESS
>>
>> --------------------------------------------------------------------------
>>
>>
>> tyr hello_1 109 mpiexec -np 4 --host
>> tyr,sunpc1,linpc1,ruester -mca
>> mca_base_component_show_load_errors 1 -mca
>> pmix_base_verbose
>> 10 -mca pmix_server_verbose 5
>> hello_1_mpi
>> [tyr.informatik.hs-fulda.de:06212
>> <http://tyr.informatik.hs-fulda.de:06212>
>> <http://tyr.informatik.hs-fulda.de:06212>]
>> mca: base:
>> components_register: registering
>> framework
>> pmix components
>> [tyr.informatik.hs-fulda.de:06212
>> <http://tyr.informatik.hs-fulda.de:06212>
>> <http://tyr.informatik.hs-fulda.de:06212>]
>> mca: base:
>> components_open: opening pmix components
>> [tyr.informatik.hs-fulda.de:06212
>> <http://tyr.informatik.hs-fulda.de:06212>
>> <http://tyr.informatik.hs-fulda.de:06212>]
>> mca:base:select:
>> Auto-selecting pmix components
>> [tyr.informatik.hs-fulda.de:06212
>> <http://tyr.informatik.hs-fulda.de:06212>
>> <http://tyr.informatik.hs-fulda.de:06212>]
>> mca:base:select:(
>> pmix) No component selected!
>> [tyr.informatik.hs-fulda.de:06212
>> <http://tyr.informatik.hs-fulda.de:06212>
>> <http://tyr.informatik.hs-fulda.de:06212>]
>> [[48738,0],0]
>> ORTE_ERROR_LOG: Not found in file
>>
>> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>>
>> at line 638
>>
>> --------------------------------------------------------------------------
>> It looks like orte_init failed for some
>> reason; your
>> parallel process is
>> likely to abort. There are many
>> reasons that
>> a parallel
>> process can
>> fail during orte_init; some of which
>> are due
>> to configuration or
>> environment problems. This failure
>> appears to
>> be an
>> internal failure;
>> here's some additional information
>> (which may
>> only be
>> relevant to an
>> Open MPI developer):
>>
>> opal_pmix_base_select failed
>> --> Returned value Not found (-13)
>> instead of
>> ORTE_SUCCESS
>>
>> --------------------------------------------------------------------------
>> tyr hello_1 110
>>
>>
>> Kind regards
>>
>> Siegmar
>>
>>
>> Am 21.04.2016 um 17:24 schrieb Ralph
>> Castain:
>>
>> Hmmm?it looks like you built the
>> right
>> components, but
>> they are not being picked up. Can
>> you run
>> your mpiexec
>> command again, adding ?-mca
>> mca_base_component_show_load_errors 1? to
>> the cmd line?
>>
>>
>> On Apr 21, 2016, at 8:16 AM,
>> Siegmar Gross
>> <siegmar.gr...@informatik.hs-fulda.de>
>> wrote:
>>
>> Hi Ralph,
>>
>> I have attached ompi_info
>> output for
>> both compilers
>> from my
>> sparc machine and the
>> listings for
>> both compilers
>> from the
>> <prefix>/lib/openmpi directories.
>> Hopefully that
>> helps to
>> find the problem.
>>
>> hermes tmp 3 tar zvft
>> openmpi-2.x_info.tar.gz
>> -rw-r--r-- root/root 10969
>> 2016-04-21 17:06
>> ompi_info_SunOS_sparc_cc.txt
>> -rw-r--r-- root/root 11044
>> 2016-04-21 17:06
>> ompi_info_SunOS_sparc_gcc.txt
>> -rw-r--r-- root/root 71252
>> 2016-04-21 17:02
>> lib64_openmpi.txt
>> hermes tmp 4
>>
>>
>> Kind regards and thank you
>> very much
>> once more for
>> your help
>>
>> Siegmar
>>
>>
>> Am 21.04.2016 um 15:54
>> schrieb Ralph
>> Castain:
>>
>> Odd - it would appear
>> that none of
>> the pmix
>> components built? Can you
>> send
>> along the output from
>> ompi_info?
>> Or just send a
>> listing of the files in the
>> <prefix>/lib/openmpi directory?
>>
>>
>> On Apr 21, 2016, at
>> 1:27 AM,
>> Siegmar Gross
>>
>> <siegmar.gr...@informatik.hs-fulda.de
>>
>> <mailto:siegmar.gr...@informatik.hs-fulda.de>>
>> wrote:
>>
>> Hi Ralph,
>>
>> Am 21.04.2016 um
>> 00:18 schrieb
>> Ralph Castain:
>>
>> Could you please
>> rerun
>> these test and
>> add ?-mca
>> pmix_base_verbose 10
>> -mca
>> pmix_server_verbose
>> 5? to your cmd
>> line? I need to
>> see why the
>> pmix components
>> failed.
>>
>>
>>
>> tyr spawn 111 mpiexec
>> -np 1 --host
>> tyr,sunpc1,linpc1,ruester -mca
>> pmix_base_verbose 10 -mca
>> pmix_server_verbose 5
>> spawn_multiple_master
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:26652] mca:
>> base:
>> components_register:
>> registering
>> framework pmix
>> components
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:26652] mca:
>> base:
>> components_open: opening
>> pmix components
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:26652]
>> mca:base:select:
>> Auto-selecting pmix components
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:26652]
>> mca:base:select:( pmix) No
>> component selected!
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:26652]
>> [[52794,0],0]
>> ORTE_ERROR_LOG:
>> Not found in file
>>
>> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>>
>> at line 638
>>
>> --------------------------------------------------------------------------
>> It looks like
>> orte_init failed
>> for some
>> reason; your parallel
>> process is
>> likely to abort.
>> There are
>> many reasons
>> that a parallel
>> process can
>> fail during
>> orte_init; some of
>> which are due
>> to configuration or
>> environment
>> problems. This
>> failure appears
>> to be an internal
>> failure;
>> here's some additional
>> information (which
>> may only be relevant
>> to an
>> Open MPI developer):
>>
>> opal_pmix_base_select failed
>> --> Returned value
>> Not found
>> (-13) instead
>> of ORTE_SUCCESS
>>
>> --------------------------------------------------------------------------
>> tyr spawn 112
>>
>>
>>
>>
>> tyr hello_1 116
>> mpiexec -np 1
>> --host
>> tyr,sunpc1,linpc1,ruester -mca
>> pmix_base_verbose 10 -mca
>> pmix_server_verbose 5 hello_1_mpi
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:27261] mca:
>> base:
>> components_register:
>> registering
>> framework pmix
>> components
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:27261] mca:
>> base:
>> components_open: opening
>> pmix components
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:27261]
>> mca:base:select:
>> Auto-selecting pmix components
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:27261]
>> mca:base:select:( pmix) No
>> component selected!
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de/>:27261]
>> [[52315,0],0]
>> ORTE_ERROR_LOG:
>> Not found in file
>>
>> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>>
>> at line 638
>>
>> --------------------------------------------------------------------------
>> It looks like
>> orte_init failed
>> for some
>> reason; your parallel
>> process is
>> likely to abort.
>> There are
>> many reasons
>> that a parallel
>> process can
>> fail during
>> orte_init; some of
>> which are due
>> to configuration or
>> environment
>> problems. This
>> failure appears
>> to be an internal
>> failure;
>> here's some additional
>> information (which
>> may only be relevant
>> to an
>> Open MPI developer):
>>
>> opal_pmix_base_select failed
>> --> Returned value
>> Not found
>> (-13) instead
>> of ORTE_SUCCESS
>>
>> --------------------------------------------------------------------------
>> tyr hello_1 117
>>
>>
>>
>> Thank you very much
>> for your help.
>>
>>
>> Kind regards
>>
>> Siegmar
>>
>>
>>
>>
>> Thanks
>> Ralph
>>
>> On Apr 20,
>> 2016, at
>> 10:12 AM,
>> Siegmar Gross
>>
>> <siegmar.gr...@informatik.hs-fulda.de
>>
>> <mailto:siegmar.gr...@informatik.hs-fulda.de>>
>> wrote:
>>
>> Hi,
>>
>> I have built
>>
>> openmpi-v2.x-dev-1280-gc110ae8 on my
>> machines
>> (Solaris 10
>> Sparc,
>> Solaris 10
>> x86_64, and
>> openSUSE Linux
>> 12.1 x86_64)
>> with
>> gcc-5.1.0 and Sun
>> C 5.13.
>> Unfortunately
>> I get
>> runtime
>> errors for
>> some programs.
>>
>>
>> Sun C 5.13:
>> ===========
>>
>> For all my test
>> programs I get the
>> same error on
>> Solaris
>> Sparc and
>> Solaris
>> x86_64, while
>> the programs
>> work fine on
>> Linux.
>>
>> tyr hello_1 115
>> mpiexec -np 2
>> hello_1_mpi
>>
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>:22373]
>> [[61763,0],0]
>> ORTE_ERROR_LOG: Not
>> found in file
>>
>> ../../../../../openmpi-v2.x-dev-1280-gc110ae8/orte/mca/ess/hnp/ess_hnp_module.c
>>
>> at line 638
>>
>> --------------------------------------------------------------------------
>> It looks like
>> orte_init failed for
>> some reason;
>> your
>> parallel process is
>> likely to abort.
>> There are many
>> reasons that a
>> parallel process can
>> fail during
>> orte_init;
>> some of which
>> are due to
>> configuration or
>> environment problems.
>> This failure
>> appears to be an
>> internal failure;
>> here's some
>> additional
>> information
>> (which may
>> only be
>> relevant to an
>> Open MPI
>> developer):
>>
>> opal_pmix_base_select
>> failed
>> --> Returned
>> value Not
>> found (-13)
>> instead of
>> ORTE_SUCCESS
>>
>> --------------------------------------------------------------------------
>> tyr hello_1 116
>>
>>
>>
>>
>> GCC-5.1.0:
>> ==========
>>
>> tyr spawn 121
>> mpiexec
>> -np 1 --host
>> tyr,sunpc1,linpc1,ruester
>> spawn_multiple_master
>>
>> Parent process 0
>> running on
>>
>> tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>> I create 3 slave
>> processes.
>>
>>
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>:25366]
>> PMIX ERROR:
>> UNPACK-PAST-END in file
>>
>> ../../../../../../openmpi-v2.x-dev-1280-gc110ae8/opal/mca/pmix/pmix112/pmix/src/server/pmix_server_ops.c
>>
>>
>> at line 829
>>
>> [tyr.informatik.hs-fulda.de
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>
>>
>> <http://tyr.informatik.hs-fulda.de>:25366]
>> PMIX ERROR:
>> UNPACK-PAST-END in file
>>
>> ../../../../../../openmpi-v2.x-dev-1280-gc110ae8/opal/mca/pmix/pmix112/pmix/src/server/pmix_server.c
>>
>>
>> at line 2176
>> [tyr:25377] *** An
>> error occurred in
>> MPI_Comm_spawn_multiple
>> [tyr:25377] ***
>> reported by process
>> [3308257281,0]
>> [tyr:25377] *** on
>> communicator
>> MPI_COMM_WORLD
>> [tyr:25377] ***
>> MPI_ERR_SPAWN: could
>> not spawn
>> processes
>> [tyr:25377] ***
>> MPI_ERRORS_ARE_FATAL
>> (processes in this
>> communicator will
>> now abort,
>> [tyr:25377] *** and
>> potentially
>> your MPI job)
>> tyr spawn 122
>>
>>
>> I would be
>> grateful if
>> somebody can
>> fix the
>> problems.
>> Thank you very
>> much for any
>> help in
>> advance.
>>
>>
>> Kind regards
>>
>> Siegmar
>>
>> <hello_1_mpi.c><spawn_multiple_master.c>_______________________________________________
>>
>>
>> users mailing
>> list
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>> post:
>>
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>>
>>
>>
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>>
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>>
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