Howard, Welp. That worked! I'm assuming oshmem = OpenSHMEM, right? If so, yeah, for now, not important on my wee workstation. (If it isn't, is it something I should work on getting to work?)
Matt On Fri, Jan 22, 2016 at 2:47 PM, Howard Pritchard <hpprit...@gmail.com> wrote: > HI Matt, > > If you don't need oshmem, you could try again with --disable-oshmem added > to the config line > > Howard > > > 2016-01-22 12:15 GMT-07:00 Matt Thompson <fort...@gmail.com>: > >> All, >> >> I'm trying to duplicate an issue I had with ESMF long ago (not sure if I >> reported it here or at ESMF, but...). It had been a while, so I started >> from scratch. I first built Open MPI 1.10.2 with Intel Fortran 16.0.0.109 >> and my system GCC (4.8.5 from RHEL7) with mostly defaults: >> >> # ./configure --disable-wrapper-rpath CC=gcc CXX=g++ FC=ifort \ >> # CFLAGS='-fPIC -m64' CXXFLAGS='-fPIC -m64' FCFLAGS='-fPIC -m64' \ >> # >> --prefix=/ford1/share/gmao_SIteam/MPI/openmpi-1.10.2-ifort-16.0.0.109-shared >> | & tee configure.intel16.0.0.109-shared.log >> >> This built and checked just fine. Huzzah! And, indeed, it died in ESMF >> during a link in an odd way (ESMF is looking at it). >> >> As a thought, I decided to see if building Open MPI statically might help >> or not. So, I tried to build Open MPI with: >> >> # ./configure --disable-shared --enable-static --disable-wrapper-rpath >> CC=gcc CXX=g++ FC=ifort \ >> # CFLAGS='-fPIC -m64' CXXFLAGS='-fPIC -m64' FCFLAGS='-fPIC -m64' \ >> # >> --prefix=/ford1/share/gmao_SIteam/MPI/openmpi-1.10.2-ifort-16.0.0.109-static >> | & tee configure.intel16.0.0.109-static.log >> >> I just added --disable-shared --enable-static being lazy. But, when I do >> this, I get this (when built with make V=1): >> >> Making all in tools/oshmem_info >> make[2]: Entering directory >> `/ford1/share/gmao_SIteam/MPI/src/openmpi-1.10.2/oshmem/tools/oshmem_info' >> /bin/sh ../../../libtool --tag=CC --mode=link gcc -std=gnu99 -O3 >> -DNDEBUG -fPIC -m64 -finline-functions -fno-strict-aliasing -pthread -o >> oshmem_info oshmem_info.o param.o ../../../ompi/libmpi.la >> ../../../oshmem/liboshmem.la ../../../orte/libopen-rte.la ../../../opal/ >> libopen-pal.la -lrt -lm -lutil >> libtool: link: gcc -std=gnu99 -O3 -DNDEBUG -fPIC -m64 -finline-functions >> -fno-strict-aliasing -pthread -o oshmem_info oshmem_info.o param.o >> ../../../ompi/.libs/libmpi.a ../../../oshmem/.libs/liboshmem.a >> /ford1/share/gmao_SIteam/MPI/src/openmpi-1.10.2/ompi/.libs/libmpi.a >> -libverbs >> /ford1/share/gmao_SIteam/MPI/src/openmpi-1.10.2/orte/.libs/libopen-rte.a >> ../../../orte/.libs/libopen-rte.a >> /ford1/share/gmao_SIteam/MPI/src/openmpi-1.10.2/opal/.libs/libopen-pal.a >> ../../../opal/.libs/libopen-pal.a -lnuma -ldl -lrt -lm -lutil -pthread >> /usr/bin/ld: ../../../oshmem/.libs/liboshmem.a(memheap_base_static.o): >> undefined reference to symbol '_end' >> /usr/bin/ld: note: '_end' is defined in DSO /lib64/libnl-route-3.so.200 >> so try adding it to the linker command line >> /lib64/libnl-route-3.so.200: could not read symbols: Invalid operation >> collect2: error: ld returned 1 exit status >> make[2]: *** [oshmem_info] Error 1 >> make[2]: Leaving directory >> `/ford1/share/gmao_SIteam/MPI/src/openmpi-1.10.2/oshmem/tools/oshmem_info' >> make[1]: *** [all-recursive] Error 1 >> make[1]: Leaving directory >> `/ford1/share/gmao_SIteam/MPI/src/openmpi-1.10.2/oshmem' >> make: *** [all-recursive] Error 1 >> >> So, what did I do wrong? Or is there something I need to add to the >> configure line? I have built static versions of Open MPI in the past (say >> 1.8.7 era with Intel Fortran 15), but this is a new OS (RHEL 7 instead of >> 6) so I can see issues possible. >> >> Anyone seen this before? As I said, the "usual" build way is just fine. >> Perhaps I need an extra RPM that isn't installed? I do have libnl-devel >> installed. >> >> -- >> Matt Thompson >> >> Man Among Men >> Fulcrum of History >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2016/01/28344.php >> > > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2016/01/28345.php > -- Matt Thompson Man Among Men Fulcrum of History
