I think so, yes.
On Mon, Jun 29, 2015 at 3:42 PM, Lane, William <william.l...@cshs.org> wrote: > Would the output of dmidecode -t processor and/or lstopo tell me > conclusively > if hyperthreading is enabled or not? Hyperthreading is supposed to be > enabled > for all the IBM x3550 M3 and M4 nodes, but I'm not sure if it actually is > and I > don't have access to the BIOS settings. > > -Bill L. > > ------------------------------ > *From:* users [users-boun...@open-mpi.org] on behalf of Ralph Castain [ > r...@open-mpi.org] > *Sent:* Saturday, June 27, 2015 7:21 PM > *To:* Open MPI Users > *Subject:* Re: [OMPI users] OpenMPI 1.8.6, CentOS 6.3, too many slots = > crash > > Bill - this is such a jumbled collection of machines that I’m having > trouble figuring out what I should replicate. I can create something > artificial here so I can try to debug this, but I need to know exactly what > I’m up against - can you tell me: > > * the architecture of each type - how many sockets, how many > cores/socket, HT on or off. If two nodes have the same physical setup but > one has HT on and the other off, then please consider those two different > types > > * how many nodes of each type > > Looking at your map output, it looks like the map is being done > correctly, but somehow the binding locale isn’t getting set in some cases. > You latest error output would seem out-of-step with your prior reports, so > something else may be going on there. As I said earlier, this is the most > hetero environment we’ve seen, and so there may be some code paths your > hitting that haven’t been well exercised before. > > > > > On Jun 26, 2015, at 5:22 PM, Lane, William <william.l...@cshs.org> wrote: > > Well, I managed to get a successful mpirun @ a slot count of 132 using > --mca btl ^sm, > however when I increased the slot count to 160, mpirun crashed without any > error > output: > > mpirun -np 160 -display-devel-map --prefix /hpc/apps/mpi/openmpi/1.8.6/ > --hostfile hostfile-noslots --mca btl ^sm --hetero-nodes --bind-to core > /hpc/home/lanew/mpi/openmpi/ProcessColors3 >> out.txt 2>&1 > > -------------------------------------------------------------------------- > WARNING: a request was made to bind a process. While the system > supports binding the process itself, at least one node does NOT > support binding memory to the process location. > > Node: csclprd3-6-1 > > This usually is due to not having the required NUMA support installed > on the node. In some Linux distributions, the required support is > contained in the libnumactl and libnumactl-devel packages. > This is a warning only; your job will continue, though performance may be > degraded. > -------------------------------------------------------------------------- > -------------------------------------------------------------------------- > A request was made to bind to that would result in binding more > processes than cpus on a resource: > > Bind to: CORE > Node: csclprd3-6-1 > #processes: 2 > #cpus: 1 > > You can override this protection by adding the "overload-allowed" > option to your binding directive. > -------------------------------------------------------------------------- > > But csclprd3-6-1 (a blade) does have 2 CPU's on 2 separate sockets w/2 > cores apiece as shown in my dmidecode output: > > csclprd3-6-1 ~]# dmidecode -t processor > # dmidecode 2.11 > SMBIOS 2.4 present. > > Handle 0x0008, DMI type 4, 32 bytes > Processor Information > Socket Designation: Socket 1 CPU 1 > Type: Central Processor > Family: Xeon > Manufacturer: GenuineIntel > ID: F6 06 00 00 01 03 00 00 > Signature: Type 0, Family 6, Model 15, Stepping 6 > Flags: > FPU (Floating-point unit on-chip) > CX8 (CMPXCHG8 instruction supported) > APIC (On-chip APIC hardware supported) > Version: Intel Xeon > Voltage: 2.9 V > External Clock: 333 MHz > Max Speed: 4000 MHz > Current Speed: 3000 MHz > Status: Populated, Enabled > Upgrade: ZIF Socket > L1 Cache Handle: 0x0004 > L2 Cache Handle: 0x0005 > L3 Cache Handle: Not Provided > > Handle 0x0009, DMI type 4, 32 bytes > Processor Information > Socket Designation: Socket 2 CPU 2 > Type: Central Processor > Family: Xeon > Manufacturer: GenuineIntel > ID: F6 06 00 00 01 03 00 00 > Signature: Type 0, Family 6, Model 15, Stepping 6 > Flags: > FPU (Floating-point unit on-chip) > CX8 (CMPXCHG8 instruction supported) > APIC (On-chip APIC hardware supported) > Version: Intel Xeon > Voltage: 2.9 V > External Clock: 333 MHz > Max Speed: 4000 MHz > Current Speed: 3000 MHz > Status: Populated, Enabled > Upgrade: ZIF Socket > L1 Cache Handle: 0x0006 > L2 Cache Handle: 0x0007 > L3 Cache Handle: Not Provided > > csclprd3-6-1 ~]# lstopo > Machine (16GB) > Socket L#0 + L2 L#0 (4096KB) > L1d L#0 (32KB) + L1i L#0 (32KB) + Core L#0 + PU L#0 (P#0) > L1d L#1 (32KB) + L1i L#1 (32KB) + Core L#1 + PU L#1 (P#2) > Socket L#1 + L2 L#1 (4096KB) > L1d L#2 (32KB) + L1i L#2 (32KB) + Core L#2 + PU L#2 (P#1) > L1d L#3 (32KB) + L1i L#3 (32KB) + Core L#3 + PU L#3 (P#3) > > csclprd3-0-1 information (which looks correct as this particular x3550 > should > have one socket populated (of two) with a 6 core Xeon (or 12 cores > w/hyperthreading > turned on): > > csclprd3-0-1 ~]# lstopo > Machine (71GB) > Socket L#0 + L3 L#0 (12MB) > L2 L#0 (256KB) + L1d L#0 (32KB) + L1i L#0 (32KB) + Core L#0 + PU > L#0 (P#0) > L2 L#1 (256KB) + L1d L#1 (32KB) + L1i L#1 (32KB) + Core L#1 + PU > L#1 (P#1) > L2 L#2 (256KB) + L1d L#2 (32KB) + L1i L#2 (32KB) + Core L#2 + PU > L#2 (P#2) > L2 L#3 (256KB) + L1d L#3 (32KB) + L1i L#3 (32KB) + Core L#3 + PU > L#3 (P#3) > L2 L#4 (256KB) + L1d L#4 (32KB) + L1i L#4 (32KB) + Core L#4 + PU > L#4 (P#4) > L2 L#5 (256KB) + L1d L#5 (32KB) + L1i L#5 (32KB) + Core L#5 + PU > L#5 (P#5) > > csclprd3-0-1 ~]# dmidecode -t processor > # dmidecode 2.11 > # SMBIOS entry point at 0x7f6be000 > SMBIOS 2.5 present. > > Handle 0x0001, DMI type 4, 40 bytes > Processor Information > Socket Designation: Node 1 Socket 1 > Type: Central Processor > Family: Xeon MP > Manufacturer: Intel(R) Corporation > ID: C2 06 02 00 FF FB EB BF > Signature: Type 0, Family 6, Model 44, Stepping 2 > Flags: > FPU (Floating-point unit on-chip) > VME (Virtual mode extension) > DE (Debugging extension) > PSE (Page size extension) > TSC (Time stamp counter) > MSR (Model specific registers) > PAE (Physical address extension) > MCE (Machine check exception) > CX8 (CMPXCHG8 instruction supported) > APIC (On-chip APIC hardware supported) > SEP (Fast system call) > MTRR (Memory type range registers) > PGE (Page global enable) > MCA (Machine check architecture) > CMOV (Conditional move instruction supported) > PAT (Page attribute table) > PSE-36 (36-bit page size extension) > CLFSH (CLFLUSH instruction supported) > DS (Debug store) > ACPI (ACPI supported) > MMX (MMX technology supported) > FXSR (FXSAVE and FXSTOR instructions supported) > SSE (Streaming SIMD extensions) > SSE2 (Streaming SIMD extensions 2) > SS (Self-snoop) > HTT (Multi-threading) > TM (Thermal monitor supported) > PBE (Pending break enabled) > Version: Intel(R) Xeon(R) CPU E5645 @ 2.40GHz > Voltage: 1.2 V > External Clock: 5866 MHz > Max Speed: 4400 MHz > Current Speed: 2400 MHz > Status: Populated, Enabled > Upgrade: ZIF Socket > L1 Cache Handle: 0x0002 > L2 Cache Handle: 0x0003 > L3 Cache Handle: 0x0004 > Serial Number: Not Specified > Asset Tag: Not Specified > Part Number: Not Specified > Core Count: 6 > Core Enabled: 6 > Thread Count: 6 > Characteristics: > 64-bit capable > > Handle 0x005A, DMI type 4, 40 bytes > Processor Information > Socket Designation: Node 1 Socket 2 > Type: Central Processor > Family: Xeon MP > Manufacturer: Not Specified > ID: 00 00 00 00 00 00 00 00 > Signature: Type 0, Family 0, Model 0, Stepping 0 > Flags: None > Version: Not Specified > Voltage: 1.2 V > External Clock: 5866 MHz > Max Speed: 4400 MHz > Current Speed: Unknown > Status: Unpopulated > Upgrade: ZIF Socket > L1 Cache Handle: Not Provided > L2 Cache Handle: Not Provided > L3 Cache Handle: Not Provided > Serial Number: Not Specified > Asset Tag: Not Specified > Part Number: Not Specified > Characteristics: None > > > ------------------------------ > *From:* users [users-boun...@open-mpi.org] on behalf of Ralph Castain [ > r...@open-mpi.org] > *Sent:* Wednesday, June 24, 2015 6:06 AM > *To:* Open MPI Users > *Subject:* Re: [OMPI users] OpenMPI 1.8.6, CentOS 6.3, too many slots = > crash > > I think trying with --mca btl ^sm makes a lot of sense and may solve > the problem. I also noted that we are having trouble with the topology of > several of the nodes - seeing only one socket, non-HT where you say we > should see two sockets and HT-enabled. In those cases, the locality is > "unknown" - given that those procs are on remote nodes from the one being > impacted, I don't think it should cause a problem. However, it isn't > correct, and that raises flags. > > My best guess of the root cause of that error is either we are getting > bad topology info on those nodes, or we have a bug that is mishandling this > scenario. It would probably be good to get this error fixed to ensure it > isn't the source of the eventual crash, even though I'm not sure they are > related. > > Bill: Can we examine one of the problem nodes? Let's pick csclprd3-0-1 > (or take another one from your list - just look for one where "locality" is > reported as "unknown" for the procs in the output map). Can you run lstopo > on that node and send us the output? In the above map, it is reporting a > single socket with 6 cores, non-HT. Is that what lstopo shows when run on > the node? Is it what you expected? > > > On Wed, Jun 24, 2015 at 4:07 AM, Gilles Gouaillardet < > gilles.gouaillar...@gmail.com> wrote: > >> Bill, >> >> were you able to get a core file and analyze the stack with gdb ? >> >> I suspect the error occurs in mca_btl_sm_add_procs but this is just my >> best guess. >> if this is correct, can you check the value of >> mca_btl_sm_component.num_smp_procs ? >> >> as a workaround, can you try >> mpirun --mca btl ^sm ... >> >> I do not see how I can tackle the root cause without being able to >> reproduce the issue :-( >> >> can you try to reproduce the issue with the smallest hostfile, and then >> run lstopo on all the nodes ? >> btw, you are not mixing 32 bits and 64 bits OS, are you ? >> >> Cheers, >> >> Gilles >> >> >> >> mca_btl_sm_add_procs( >> >> int mca_btl_sm_add_procs( >> On Wednesday, June 24, 2015, Lane, William <william.l...@cshs.org> wrote: >> >>> Gilles, >>> >>> All the blades only have two core Xeons (without hyperthreading) >>> populating both their sockets. All >>> the x3550 nodes have hyperthreading capable Xeons and Sandybridge server >>> CPU's. It's possible >>> hyperthreading has been disabled on some of these nodes though. The >>> 3-0-n nodes are all IBM x3550 >>> nodes while the 3-6-n nodes are all blade nodes. >>> >>> I have run this exact same test code successfully in the past on another >>> cluster (~200 nodes of Sunfire X2100 >>> 2x dual-core Opterons) w/no issues on upwards of 390 slots. I even >>> tested it recently on OpenMPI 1.8.5 >>> on another smaller R&D cluster consisting of 10 Sunfire X2100 nodes (w/2 >>> dual core Opterons apiece). >>> On this particular cluster I've had success running this code on < 132 >>> slots. >>> >>> Anyway, here's the results of the following mpirun: >>> >>> mpirun -np 132 -display-devel-map --prefix /hpc/apps/mpi/openmpi/1.8.6/ >>> --hostfile hostfile-noslots --mca btl_tcp_if_include eth0 --hetero-nodes >>> --bind-to core /hpc/home/lanew/mpi/openmpi/ProcessColors3 >> out.txt 2>&1 >>> >>> >>> -------------------------------------------------------------------------- >>> WARNING: a request was made to bind a process. While the system >>> supports binding the process itself, at least one node does NOT >>> support binding memory to the process location. >>> >>> Node: csclprd3-6-1 >>> >>> This usually is due to not having the required NUMA support installed >>> on the node. In some Linux distributions, the required support is >>> contained in the libnumactl and libnumactl-devel packages. >>> This is a warning only; your job will continue, though performance may >>> be degraded. >>> >>> -------------------------------------------------------------------------- >>> Data for JOB [51718,1] offset 0 >>> >>> Mapper requested: NULL Last mapper: round_robin Mapping policy: >>> BYSOCKET Ranking policy: SLOT >>> Binding policy: CORE Cpu set: NULL PPR: NULL Cpus-per-rank: 1 >>> Num new daemons: 0 New daemon starting vpid INVALID >>> Num nodes: 15 >>> >>> Data for node: csclprd3-6-1 Launch id: -1 State: 0 >>> Daemon: [[51718,0],1] Daemon launched: True >>> Num slots: 4 Slots in use: 4 Oversubscribed: FALSE >>> Num slots allocated: 4 Max slots: 0 >>> Username on node: NULL >>> Num procs: 4 Next node_rank: 4 >>> Data for proc: [[51718,1],0] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 0 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B][./.] >>> Binding: [B/.][./.] >>> Data for proc: [[51718,1],1] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 1 >>> State: INITIALIZED App_context: 0 >>> Locale: [./.][B/B] >>> Binding: [./.][B/.] >>> Data for proc: [[51718,1],2] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 2 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B][./.] >>> Binding: [./B][./.] >>> Data for proc: [[51718,1],3] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 3 >>> State: INITIALIZED App_context: 0 >>> Locale: [./.][B/B] >>> Binding: [./.][./B] >>> >>> Data for node: csclprd3-6-5 Launch id: -1 State: 0 >>> Daemon: [[51718,0],2] Daemon launched: True >>> Num slots: 4 Slots in use: 4 Oversubscribed: FALSE >>> Num slots allocated: 4 Max slots: 0 >>> Username on node: NULL >>> Num procs: 4 Next node_rank: 4 >>> Data for proc: [[51718,1],4] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 4 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B][./.] >>> Binding: [B/.][./.] >>> Data for proc: [[51718,1],5] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 5 >>> State: INITIALIZED App_context: 0 >>> Locale: [./.][B/B] >>> Binding: [./.][B/.] >>> Data for proc: [[51718,1],6] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 6 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B][./.] >>> Binding: [./B][./.] >>> Data for proc: [[51718,1],7] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 7 >>> State: INITIALIZED App_context: 0 >>> Locale: [./.][B/B] >>> Binding: [./.][./B] >>> >>> Data for node: csclprd3-0-0 Launch id: -1 State: 0 >>> Daemon: [[51718,0],3] Daemon launched: True >>> Num slots: 12 Slots in use: 12 Oversubscribed: FALSE >>> Num slots allocated: 12 Max slots: 0 >>> Username on node: NULL >>> Num procs: 12 Next node_rank: 12 >>> Data for proc: [[51718,1],8] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 8 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B/B/B/B/B][./././././.] >>> Binding: [B/././././.][./././././.] >>> Data for proc: [[51718,1],9] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 9 >>> State: INITIALIZED App_context: 0 >>> Locale: [./././././.][B/B/B/B/B/B] >>> Binding: [./././././.][B/././././.] >>> Data for proc: [[51718,1],10] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 10 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B/B/B/B/B][./././././.] >>> Binding: [./B/./././.][./././././.] >>> Data for proc: [[51718,1],11] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 11 >>> State: INITIALIZED App_context: 0 >>> Locale: [./././././.][B/B/B/B/B/B] >>> Binding: [./././././.][./B/./././.] >>> Data for proc: [[51718,1],12] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 12 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B/B/B/B/B][./././././.] >>> Binding: [././B/././.][./././././.] >>> Data for proc: [[51718,1],13] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 13 >>> State: INITIALIZED App_context: 0 >>> Locale: [./././././.][B/B/B/B/B/B] >>> Binding: [./././././.][././B/././.] >>> Data for proc: [[51718,1],14] >>> Pid: 0 Local rank: 6 Node rank: 6 App rank: 14 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B/B/B/B/B][./././././.] >>> Binding: [./././B/./.][./././././.] >>> Data for proc: [[51718,1],15] >>> Pid: 0 Local rank: 7 Node rank: 7 App rank: 15 >>> State: INITIALIZED App_context: 0 >>> Locale: [./././././.][B/B/B/B/B/B] >>> Binding: [./././././.][./././B/./.] >>> Data for proc: [[51718,1],16] >>> Pid: 0 Local rank: 8 Node rank: 8 App rank: 16 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B/B/B/B/B][./././././.] >>> Binding: [././././B/.][./././././.] >>> Data for proc: [[51718,1],17] >>> Pid: 0 Local rank: 9 Node rank: 9 App rank: 17 >>> State: INITIALIZED App_context: 0 >>> Locale: [./././././.][B/B/B/B/B/B] >>> Binding: [./././././.][././././B/.] >>> Data for proc: [[51718,1],18] >>> Pid: 0 Local rank: 10 Node rank: 10 App rank: 18 >>> State: INITIALIZED App_context: 0 >>> Locale: [B/B/B/B/B/B][./././././.] >>> Binding: [./././././B][./././././.] >>> Data for proc: [[51718,1],19] >>> Pid: 0 Local rank: 11 Node rank: 11 App rank: 19 >>> State: INITIALIZED App_context: 0 >>> Locale: [./././././.][B/B/B/B/B/B] >>> Binding: [./././././.][./././././B] >>> >>> Data for node: csclprd3-0-1 Launch id: -1 State: 0 >>> Daemon: [[51718,0],4] Daemon launched: True >>> Num slots: 6 Slots in use: 6 Oversubscribed: FALSE >>> Num slots allocated: 6 Max slots: 0 >>> Username on node: NULL >>> Num procs: 6 Next node_rank: 6 >>> Data for proc: [[51718,1],20] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 20 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [B/././././.] >>> Data for proc: [[51718,1],21] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 21 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./B/./././.] >>> Data for proc: [[51718,1],22] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 22 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././B/././.] >>> Data for proc: [[51718,1],23] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 23 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././B/./.] >>> Data for proc: [[51718,1],24] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 24 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././././B/.] >>> Data for proc: [[51718,1],25] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 25 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././././B] >>> >>> Data for node: csclprd3-0-2 Launch id: -1 State: 0 >>> Daemon: [[51718,0],5] Daemon launched: True >>> Num slots: 6 Slots in use: 6 Oversubscribed: FALSE >>> Num slots allocated: 6 Max slots: 0 >>> Username on node: NULL >>> Num procs: 6 Next node_rank: 6 >>> Data for proc: [[51718,1],26] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 26 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [B/././././.] >>> Data for proc: [[51718,1],27] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 27 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./B/./././.] >>> Data for proc: [[51718,1],28] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 28 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././B/././.] >>> Data for proc: [[51718,1],29] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 29 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././B/./.] >>> Data for proc: [[51718,1],30] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 30 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././././B/.] >>> Data for proc: [[51718,1],31] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 31 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././././B] >>> >>> Data for node: csclprd3-0-3 Launch id: -1 State: 0 >>> Daemon: [[51718,0],6] Daemon launched: True >>> Num slots: 6 Slots in use: 6 Oversubscribed: FALSE >>> Num slots allocated: 6 Max slots: 0 >>> Username on node: NULL >>> Num procs: 6 Next node_rank: 6 >>> Data for proc: [[51718,1],32] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 32 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [B/././././.] >>> Data for proc: [[51718,1],33] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 33 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./B/./././.] >>> Data for proc: [[51718,1],34] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 34 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././B/././.] >>> Data for proc: [[51718,1],35] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 35 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././B/./.] >>> Data for proc: [[51718,1],36] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 36 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././././B/.] >>> Data for proc: [[51718,1],37] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 37 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././././B] >>> >>> Data for node: csclprd3-0-4 Launch id: -1 State: 0 >>> Daemon: [[51718,0],7] Daemon launched: True >>> Num slots: 6 Slots in use: 6 Oversubscribed: FALSE >>> Num slots allocated: 6 Max slots: 0 >>> Username on node: NULL >>> Num procs: 6 Next node_rank: 6 >>> Data for proc: [[51718,1],38] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 38 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [B/././././.] >>> Data for proc: [[51718,1],39] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 39 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./B/./././.] >>> Data for proc: [[51718,1],40] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 40 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././B/././.] >>> Data for proc: [[51718,1],41] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 41 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././B/./.] >>> Data for proc: [[51718,1],42] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 42 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././././B/.] >>> Data for proc: [[51718,1],43] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 43 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././././B] >>> >>> Data for node: csclprd3-0-5 Launch id: -1 State: 0 >>> Daemon: [[51718,0],8] Daemon launched: True >>> Num slots: 6 Slots in use: 6 Oversubscribed: FALSE >>> Num slots allocated: 6 Max slots: 0 >>> Username on node: NULL >>> Num procs: 6 Next node_rank: 6 >>> Data for proc: [[51718,1],44] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 44 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [B/././././.] >>> Data for proc: [[51718,1],45] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 45 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./B/./././.] >>> Data for proc: [[51718,1],46] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 46 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././B/././.] >>> Data for proc: [[51718,1],47] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 47 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././B/./.] >>> Data for proc: [[51718,1],48] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 48 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././././B/.] >>> Data for proc: [[51718,1],49] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 49 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././././B] >>> >>> Data for node: csclprd3-0-6 Launch id: -1 State: 0 >>> Daemon: [[51718,0],9] Daemon launched: True >>> Num slots: 6 Slots in use: 6 Oversubscribed: FALSE >>> Num slots allocated: 6 Max slots: 0 >>> Username on node: NULL >>> Num procs: 6 Next node_rank: 6 >>> Data for proc: [[51718,1],50] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 50 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [B/././././.] >>> Data for proc: [[51718,1],51] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 51 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./B/./././.] >>> Data for proc: [[51718,1],52] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 52 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././B/././.] >>> Data for proc: [[51718,1],53] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 53 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././B/./.] >>> Data for proc: [[51718,1],54] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 54 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [././././B/.] >>> Data for proc: [[51718,1],55] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 55 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [./././././B] >>> >>> Data for node: csclprd3-0-7 Launch id: -1 State: 0 >>> Daemon: [[51718,0],10] Daemon launched: True >>> Num slots: 16 Slots in use: 16 Oversubscribed: FALSE >>> Num slots allocated: 16 Max slots: 0 >>> Username on node: NULL >>> Num procs: 16 Next node_rank: 16 >>> Data for proc: [[51718,1],56] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 56 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [BB/../../../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],57] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 57 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][BB/../../../../../../..] >>> Data for proc: [[51718,1],58] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 58 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../BB/../../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],59] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 59 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../BB/../../../../../..] >>> Data for proc: [[51718,1],60] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 60 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../BB/../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],61] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 61 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../BB/../../../../..] >>> Data for proc: [[51718,1],62] >>> Pid: 0 Local rank: 6 Node rank: 6 App rank: 62 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../BB/../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],63] >>> Pid: 0 Local rank: 7 Node rank: 7 App rank: 63 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../BB/../../../..] >>> Data for proc: [[51718,1],64] >>> Pid: 0 Local rank: 8 Node rank: 8 App rank: 64 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../BB/../../..][../../../../../../../..] >>> Data for proc: [[51718,1],65] >>> Pid: 0 Local rank: 9 Node rank: 9 App rank: 65 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../BB/../../..] >>> Data for proc: [[51718,1],66] >>> Pid: 0 Local rank: 10 Node rank: 10 App rank: 66 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../BB/../..][../../../../../../../..] >>> Data for proc: [[51718,1],67] >>> Pid: 0 Local rank: 11 Node rank: 11 App rank: 67 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../BB/../..] >>> Data for proc: [[51718,1],68] >>> Pid: 0 Local rank: 12 Node rank: 12 App rank: 68 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../../BB/..][../../../../../../../..] >>> Data for proc: [[51718,1],69] >>> Pid: 0 Local rank: 13 Node rank: 13 App rank: 69 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../../BB/..] >>> Data for proc: [[51718,1],70] >>> Pid: 0 Local rank: 14 Node rank: 14 App rank: 70 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../../../BB][../../../../../../../..] >>> Data for proc: [[51718,1],71] >>> Pid: 0 Local rank: 15 Node rank: 15 App rank: 71 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../../../BB] >>> >>> Data for node: csclprd3-0-8 Launch id: -1 State: 0 >>> Daemon: [[51718,0],11] Daemon launched: True >>> Num slots: 16 Slots in use: 16 Oversubscribed: FALSE >>> Num slots allocated: 16 Max slots: 0 >>> Username on node: NULL >>> Num procs: 16 Next node_rank: 16 >>> Data for proc: [[51718,1],72] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 72 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [BB/../../../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],73] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 73 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][BB/../../../../../../..] >>> Data for proc: [[51718,1],74] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 74 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../BB/../../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],75] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 75 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../BB/../../../../../..] >>> Data for proc: [[51718,1],76] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 76 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../BB/../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],77] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 77 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../BB/../../../../..] >>> Data for proc: [[51718,1],78] >>> Pid: 0 Local rank: 6 Node rank: 6 App rank: 78 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../BB/../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],79] >>> Pid: 0 Local rank: 7 Node rank: 7 App rank: 79 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../BB/../../../..] >>> Data for proc: [[51718,1],80] >>> Pid: 0 Local rank: 8 Node rank: 8 App rank: 80 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../BB/../../..][../../../../../../../..] >>> Data for proc: [[51718,1],81] >>> Pid: 0 Local rank: 9 Node rank: 9 App rank: 81 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../BB/../../..] >>> Data for proc: [[51718,1],82] >>> Pid: 0 Local rank: 10 Node rank: 10 App rank: 82 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../BB/../..][../../../../../../../..] >>> Data for proc: [[51718,1],83] >>> Pid: 0 Local rank: 11 Node rank: 11 App rank: 83 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../BB/../..] >>> Data for proc: [[51718,1],84] >>> Pid: 0 Local rank: 12 Node rank: 12 App rank: 84 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../../BB/..][../../../../../../../..] >>> Data for proc: [[51718,1],85] >>> Pid: 0 Local rank: 13 Node rank: 13 App rank: 85 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../../BB/..] >>> Data for proc: [[51718,1],86] >>> Pid: 0 Local rank: 14 Node rank: 14 App rank: 86 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../../../BB][../../../../../../../..] >>> Data for proc: [[51718,1],87] >>> Pid: 0 Local rank: 15 Node rank: 15 App rank: 87 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../../../BB] >>> >>> Data for node: csclprd3-0-10 Launch id: -1 State: 0 >>> Daemon: [[51718,0],12] Daemon launched: True >>> Num slots: 16 Slots in use: 16 Oversubscribed: FALSE >>> Num slots allocated: 16 Max slots: 0 >>> Username on node: NULL >>> Num procs: 16 Next node_rank: 16 >>> Data for proc: [[51718,1],88] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 88 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [BB/../../../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],89] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 89 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][BB/../../../../../../..] >>> Data for proc: [[51718,1],90] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 90 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../BB/../../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],91] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 91 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../BB/../../../../../..] >>> Data for proc: [[51718,1],92] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 92 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../BB/../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],93] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 93 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../BB/../../../../..] >>> Data for proc: [[51718,1],94] >>> Pid: 0 Local rank: 6 Node rank: 6 App rank: 94 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../BB/../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],95] >>> Pid: 0 Local rank: 7 Node rank: 7 App rank: 95 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../BB/../../../..] >>> Data for proc: [[51718,1],96] >>> Pid: 0 Local rank: 8 Node rank: 8 App rank: 96 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../BB/../../..][../../../../../../../..] >>> Data for proc: [[51718,1],97] >>> Pid: 0 Local rank: 9 Node rank: 9 App rank: 97 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../BB/../../..] >>> Data for proc: [[51718,1],98] >>> Pid: 0 Local rank: 10 Node rank: 10 App rank: 98 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../BB/../..][../../../../../../../..] >>> Data for proc: [[51718,1],99] >>> Pid: 0 Local rank: 11 Node rank: 11 App rank: 99 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../BB/../..] >>> Data for proc: [[51718,1],100] >>> Pid: 0 Local rank: 12 Node rank: 12 App rank: 100 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../../BB/..][../../../../../../../..] >>> Data for proc: [[51718,1],101] >>> Pid: 0 Local rank: 13 Node rank: 13 App rank: 101 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../../BB/..] >>> Data for proc: [[51718,1],102] >>> Pid: 0 Local rank: 14 Node rank: 14 App rank: 102 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../../../BB][../../../../../../../..] >>> Data for proc: [[51718,1],103] >>> Pid: 0 Local rank: 15 Node rank: 15 App rank: 103 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../../../BB] >>> >>> Data for node: csclprd3-0-11 Launch id: -1 State: 0 >>> Daemon: [[51718,0],13] Daemon launched: True >>> Num slots: 16 Slots in use: 16 Oversubscribed: FALSE >>> Num slots allocated: 16 Max slots: 0 >>> Username on node: NULL >>> Num procs: 16 Next node_rank: 16 >>> Data for proc: [[51718,1],104] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 104 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [BB/../../../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],105] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 105 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][BB/../../../../../../..] >>> Data for proc: [[51718,1],106] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 106 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../BB/../../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],107] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 107 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../BB/../../../../../..] >>> Data for proc: [[51718,1],108] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 108 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../BB/../../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],109] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 109 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../BB/../../../../..] >>> Data for proc: [[51718,1],110] >>> Pid: 0 Local rank: 6 Node rank: 6 App rank: 110 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../BB/../../../..][../../../../../../../..] >>> Data for proc: [[51718,1],111] >>> Pid: 0 Local rank: 7 Node rank: 7 App rank: 111 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../BB/../../../..] >>> Data for proc: [[51718,1],112] >>> Pid: 0 Local rank: 8 Node rank: 8 App rank: 112 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../BB/../../..][../../../../../../../..] >>> Data for proc: [[51718,1],113] >>> Pid: 0 Local rank: 9 Node rank: 9 App rank: 113 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../BB/../../..] >>> Data for proc: [[51718,1],114] >>> Pid: 0 Local rank: 10 Node rank: 10 App rank: 114 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../BB/../..][../../../../../../../..] >>> Data for proc: [[51718,1],115] >>> Pid: 0 Local rank: 11 Node rank: 11 App rank: 115 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../BB/../..] >>> Data for proc: [[51718,1],116] >>> Pid: 0 Local rank: 12 Node rank: 12 App rank: 116 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../../BB/..][../../../../../../../..] >>> Data for proc: [[51718,1],117] >>> Pid: 0 Local rank: 13 Node rank: 13 App rank: 117 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../../BB/..] >>> Data for proc: [[51718,1],118] >>> Pid: 0 Local rank: 14 Node rank: 14 App rank: 118 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>> Binding: [../../../../../../../BB][../../../../../../../..] >>> Data for proc: [[51718,1],119] >>> Pid: 0 Local rank: 15 Node rank: 15 App rank: 119 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../../../..][../../../../../../../BB] >>> >>> Data for node: csclprd3-0-12 Launch id: -1 State: 0 >>> Daemon: [[51718,0],14] Daemon launched: True >>> Num slots: 6 Slots in use: 6 Oversubscribed: FALSE >>> Num slots allocated: 6 Max slots: 0 >>> Username on node: NULL >>> Num procs: 6 Next node_rank: 6 >>> Data for proc: [[51718,1],120] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 120 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [BB/../../../../..] >>> Data for proc: [[51718,1],121] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 121 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [../BB/../../../..] >>> Data for proc: [[51718,1],122] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 122 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [../../BB/../../..] >>> Data for proc: [[51718,1],123] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 123 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [../../../BB/../..] >>> Data for proc: [[51718,1],124] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 124 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [../../../../BB/..] >>> Data for proc: [[51718,1],125] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 125 >>> State: INITIALIZED App_context: 0 >>> Locale: UNKNOWN >>> Binding: [../../../../../BB] >>> >>> Data for node: csclprd3-0-13 Launch id: -1 State: 0 >>> Daemon: [[51718,0],15] Daemon launched: True >>> Num slots: 12 Slots in use: 6 Oversubscribed: FALSE >>> Num slots allocated: 12 Max slots: 0 >>> Username on node: NULL >>> Num procs: 6 Next node_rank: 6 >>> Data for proc: [[51718,1],126] >>> Pid: 0 Local rank: 0 Node rank: 0 App rank: 126 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB][../../../../../..] >>> Binding: [BB/../../../../..][../../../../../..] >>> Data for proc: [[51718,1],127] >>> Pid: 0 Local rank: 1 Node rank: 1 App rank: 127 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../..][BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../..][BB/../../../../..] >>> Data for proc: [[51718,1],128] >>> Pid: 0 Local rank: 2 Node rank: 2 App rank: 128 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB][../../../../../..] >>> Binding: [../BB/../../../..][../../../../../..] >>> Data for proc: [[51718,1],129] >>> Pid: 0 Local rank: 3 Node rank: 3 App rank: 129 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../..][BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../..][../BB/../../../..] >>> Data for proc: [[51718,1],130] >>> Pid: 0 Local rank: 4 Node rank: 4 App rank: 130 >>> State: INITIALIZED App_context: 0 >>> Locale: [BB/BB/BB/BB/BB/BB][../../../../../..] >>> Binding: [../../BB/../../..][../../../../../..] >>> Data for proc: [[51718,1],131] >>> Pid: 0 Local rank: 5 Node rank: 5 App rank: 131 >>> State: INITIALIZED App_context: 0 >>> Locale: [../../../../../..][BB/BB/BB/BB/BB/BB] >>> Binding: [../../../../../..][../../BB/../../..] >>> [csclprd3-0-13:31619] *** Process received signal *** >>> [csclprd3-0-13:31619] Signal: Bus error (7) >>> [csclprd3-0-13:31619] Signal code: Non-existant physical address (2) >>> [csclprd3-0-13:31619] Failing at address: 0x7f1374267a00 >>> [csclprd3-0-13:31620] *** Process received signal *** >>> [csclprd3-0-13:31620] Signal: Bus error (7) >>> [csclprd3-0-13:31620] Signal code: Non-existant physical address (2) >>> [csclprd3-0-13:31620] Failing at address: 0x7fcc702a7980 >>> [csclprd3-0-13:31615] *** Process received signal *** >>> [csclprd3-0-13:31615] Signal: Bus error (7) >>> [csclprd3-0-13:31615] Signal code: Non-existant physical address (2) >>> [csclprd3-0-13:31615] Failing at address: 0x7f8128367880 >>> [csclprd3-0-13:31616] *** Process received signal *** >>> [csclprd3-0-13:31616] Signal: Bus error (7) >>> [csclprd3-0-13:31616] Signal code: Non-existant physical address (2) >>> [csclprd3-0-13:31616] Failing at address: 0x7fe674227a00 >>> [csclprd3-0-13:31617] *** Process received signal *** >>> [csclprd3-0-13:31617] Signal: Bus error (7) >>> [csclprd3-0-13:31617] Signal code: Non-existant physical address (2) >>> [csclprd3-0-13:31617] Failing at address: 0x7f061c32db80 >>> [csclprd3-0-13:31618] *** Process received signal *** >>> [csclprd3-0-13:31618] Signal: Bus error (7) >>> [csclprd3-0-13:31618] Signal code: Non-existant physical address (2) >>> [csclprd3-0-13:31618] Failing at address: 0x7fb8402eaa80 >>> [csclprd3-0-13:31618] [ 0] >>> /lib64/libpthread.so.0(+0xf500)[0x7fb851851500] >>> [csclprd3-0-13:31618] [ 1] [csclprd3-0-13:31616] [ 0] >>> /lib64/libpthread.so.0(+0xf500)[0x7fe6843a4500] >>> [csclprd3-0-13:31616] [ 1] [csclprd3-0-13:31620] [ 0] >>> /lib64/libpthread.so.0(+0xf500)[0x7fcc80c54500] >>> [csclprd3-0-13:31620] [ 1] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x167f61)[0x7fcc80fc9f61] >>> [csclprd3-0-13:31620] [ 2] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x168047)[0x7fcc80fca047] >>> [csclprd3-0-13:31620] [ 3] [csclprd3-0-13:31615] [ 0] >>> /lib64/libpthread.so.0(+0xf500)[0x7f81385ca500] >>> [csclprd3-0-13:31615] [ 1] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x167f61)[0x7f813893ff61] >>> [csclprd3-0-13:31615] [ 2] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x168047)[0x7f8138940047] >>> [csclprd3-0-13:31615] [ 3] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x167f61)[0x7fb851bc6f61] >>> [csclprd3-0-13:31618] [ 2] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x168047)[0x7fb851bc7047] >>> [csclprd3-0-13:31618] [ 3] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x55670)[0x7fb851ab4670] >>> [csclprd3-0-13:31618] [ 4] [csclprd3-0-13:31617] [ 0] >>> /lib64/libpthread.so.0(+0xf500)[0x7f062cfe5500] >>> [csclprd3-0-13:31617] [ 1] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x167f61)[0x7f062d35af61] >>> [csclprd3-0-13:31617] [ 2] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x168047)[0x7f062d35b047] >>> [csclprd3-0-13:31617] [ 3] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x55670)[0x7f062d248670] >>> [csclprd3-0-13:31617] [ 4] [csclprd3-0-13:31619] [ 0] >>> /lib64/libpthread.so.0(+0xf500)[0x7f1384fde500] >>> [csclprd3-0-13:31619] [ 1] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x167f61)[0x7f1385353f61] >>> [csclprd3-0-13:31619] [ 2] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x167f61)[0x7fe684719f61] >>> [csclprd3-0-13:31616] [ 2] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x168047)[0x7fe68471a047] >>> [csclprd3-0-13:31616] [ 3] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x55670)[0x7fe684607670] >>> [csclprd3-0-13:31616] [ 4] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x168047)[0x7f1385354047] >>> [csclprd3-0-13:31619] [ 3] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x55670)[0x7f1385241670] >>> [csclprd3-0-13:31619] [ 4] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_grow+0x3b9)[0x7f13852425ab] >>> [csclprd3-0-13:31619] [ 5] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_resize_mt+0xfb)[0x7f1385242751] >>> [csclprd3-0-13:31619] [ 6] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_btl_sm_add_procs+0x671)[0x7f13853501c9] >>> [csclprd3-0-13:31619] [ 7] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x14a628)[0x7f1385336628] >>> [csclprd3-0-13:31619] [ 8] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x55670)[0x7fcc80eb7670] >>> [csclprd3-0-13:31620] [ 4] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_grow+0x3b9)[0x7fcc80eb85ab] >>> [csclprd3-0-13:31620] [ 5] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_resize_mt+0xfb)[0x7fcc80eb8751] >>> [csclprd3-0-13:31620] [ 6] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_btl_sm_add_procs+0x671)[0x7fcc80fc61c9] >>> [csclprd3-0-13:31620] [ 7] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x14a628)[0x7fcc80fac628] >>> [csclprd3-0-13:31620] [ 8] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_pml_ob1_add_procs+0xff)[0x7fcc8111fd61] >>> [csclprd3-0-13:31620] [ 9] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x55670)[0x7f813882d670] >>> [csclprd3-0-13:31615] [ 4] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_grow+0x3b9)[0x7f813882e5ab] >>> [csclprd3-0-13:31615] [ 5] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_resize_mt+0xfb)[0x7f813882e751] >>> [csclprd3-0-13:31615] [ 6] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_btl_sm_add_procs+0x671)[0x7f813893c1c9] >>> [csclprd3-0-13:31615] [ 7] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x14a628)[0x7f8138922628] >>> [csclprd3-0-13:31615] [ 8] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_pml_ob1_add_procs+0xff)[0x7f8138a95d61] >>> [csclprd3-0-13:31615] [ 9] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_mpi_init+0xbda)[0x7f813885d747] >>> [csclprd3-0-13:31615] [10] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_grow+0x3b9)[0x7fb851ab55ab] >>> [csclprd3-0-13:31618] [ 5] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_resize_mt+0xfb)[0x7fb851ab5751] >>> [csclprd3-0-13:31618] [ 6] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_btl_sm_add_procs+0x671)[0x7fb851bc31c9] >>> [csclprd3-0-13:31618] [ 7] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x14a628)[0x7fb851ba9628] >>> [csclprd3-0-13:31618] [ 8] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_pml_ob1_add_procs+0xff)[0x7fb851d1cd61] >>> [csclprd3-0-13:31618] [ 9] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_mpi_init+0xbda)[0x7fb851ae4747] >>> [csclprd3-0-13:31618] [10] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_grow+0x3b9)[0x7f062d2495ab] >>> [csclprd3-0-13:31617] [ 5] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_resize_mt+0xfb)[0x7f062d249751] >>> [csclprd3-0-13:31617] [ 6] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_btl_sm_add_procs+0x671)[0x7f062d3571c9] >>> [csclprd3-0-13:31617] [ 7] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x14a628)[0x7f062d33d628] >>> [csclprd3-0-13:31617] [ 8] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_pml_ob1_add_procs+0xff)[0x7f062d4b0d61] >>> [csclprd3-0-13:31617] [ 9] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_mpi_init+0xbda)[0x7f062d278747] >>> [csclprd3-0-13:31617] [10] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_grow+0x3b9)[0x7fe6846085ab] >>> [csclprd3-0-13:31616] [ 5] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_free_list_resize_mt+0xfb)[0x7fe684608751] >>> [csclprd3-0-13:31616] [ 6] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_btl_sm_add_procs+0x671)[0x7fe6847161c9] >>> [csclprd3-0-13:31616] [ 7] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(+0x14a628)[0x7fe6846fc628] >>> [csclprd3-0-13:31616] [ 8] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_pml_ob1_add_procs+0xff)[0x7fe68486fd61] >>> [csclprd3-0-13:31616] [ 9] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_mpi_init+0xbda)[0x7fe684637747] >>> [csclprd3-0-13:31616] [10] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(MPI_Init+0x185)[0x7fe68467750b] >>> [csclprd3-0-13:31616] [11] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400ad0] >>> [csclprd3-0-13:31616] [12] >>> /lib64/libc.so.6(__libc_start_main+0xfd)[0x7fe684021cdd] >>> [csclprd3-0-13:31616] [13] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400999] >>> [csclprd3-0-13:31616] *** End of error message *** >>> >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(MPI_Init+0x185)[0x7f062d2b850b] >>> [csclprd3-0-13:31617] [11] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400ad0] >>> [csclprd3-0-13:31617] [12] >>> /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f062cc62cdd] >>> [csclprd3-0-13:31617] [13] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400999] >>> [csclprd3-0-13:31617] *** End of error message *** >>> >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(mca_pml_ob1_add_procs+0xff)[0x7f13854a9d61] >>> [csclprd3-0-13:31619] [ 9] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_mpi_init+0xbda)[0x7f1385271747] >>> [csclprd3-0-13:31619] [10] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(MPI_Init+0x185)[0x7f13852b150b] >>> [csclprd3-0-13:31619] [11] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400ad0] >>> [csclprd3-0-13:31619] [12] >>> /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f1384c5bcdd] >>> [csclprd3-0-13:31619] [13] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400999] >>> [csclprd3-0-13:31619] *** End of error message *** >>> >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(ompi_mpi_init+0xbda)[0x7fcc80ee7747] >>> [csclprd3-0-13:31620] [10] >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(MPI_Init+0x185)[0x7fcc80f2750b] >>> [csclprd3-0-13:31620] [11] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400ad0] >>> [csclprd3-0-13:31620] [12] >>> /lib64/libc.so.6(__libc_start_main+0xfd)[0x7fcc808d1cdd] >>> [csclprd3-0-13:31620] [13] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400999] >>> [csclprd3-0-13:31620] *** End of error message *** >>> >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(MPI_Init+0x185)[0x7f813889d50b] >>> [csclprd3-0-13:31615] [11] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400ad0] >>> [csclprd3-0-13:31615] [12] >>> /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f8138247cdd] >>> [csclprd3-0-13:31615] [13] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400999] >>> [csclprd3-0-13:31615] *** End of error message *** >>> >>> /hpc/apps/mpi/openmpi/1.8.6/lib/libmpi.so.1(MPI_Init+0x185)[0x7fb851b2450b] >>> [csclprd3-0-13:31618] [11] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400ad0] >>> [csclprd3-0-13:31618] [12] >>> /lib64/libc.so.6(__libc_start_main+0xfd)[0x7fb8514cecdd] >>> [csclprd3-0-13:31618] [13] >>> /hpc/home/lanew/mpi/openmpi/ProcessColors3[0x400999] >>> [csclprd3-0-13:31618] *** End of error message *** >>> >>> -------------------------------------------------------------------------- >>> mpirun noticed that process rank 126 with PID 0 on node csclprd3-0-13 >>> exited on signal 7 (Bus error). >>> >>> -------------------------------------------------------------------------- >>> >>> ------------------------------ >>> *From:* users [users-boun...@open-mpi.org] on behalf of Ralph Castain [ >>> r...@open-mpi.org] >>> *Sent:* Tuesday, June 23, 2015 6:20 PM >>> *To:* Open MPI Users >>> *Subject:* Re: [OMPI users] OpenMPI 1.8.6, CentOS 6.3, too many slots = >>> crash >>> >>> Wow - that is one sick puppy! I see that some nodes are reporting >>> not-bound for their procs, and the rest are binding to socket (as they >>> should). Some of your nodes clearly do not have hyper threads enabled (or >>> only have single-thread cores on them), and have 2 cores/socket. Other >>> nodes have 8 cores/socket with hyper threads enabled, while still others >>> have 6 cores/socket and HT enabled. >>> >>> I don't see anyone binding to a single HT if multiple HTs/core are >>> available. I think you are being fooled by those nodes that either don't >>> have HT enabled, or have only 1 HT/core. >>> >>> In both cases, it is node 13 that is the node that fails. I also note >>> that you said everything works okay with < 132 ranks, and node 13 hosts >>> ranks 127-131. So node 13 would host ranks even if you reduced the number >>> in the job to 131. This would imply that it probably isn't something wrong >>> with the node itself. >>> >>> Is there any way you could run a job of this size on a homogeneous >>> cluster? The procs all show bindings that look right, but I'm wondering if >>> the heterogeneity is the source of the trouble here. We may be >>> communicating the binding pattern incorrectly and giving bad info to the >>> backend daemon. >>> >>> Also, rather than --report-bindings, use "--display-devel-map" on the >>> command line and let's see what the mapper thinks it did. If there is a >>> problem with placement, that is where it would exist. >>> >>> >>> On Tue, Jun 23, 2015 at 5:12 PM, Lane, William <william.l...@cshs.org> >>> wrote: >>> >>>> Ralph, >>>> >>>> There is something funny going on, the trace from the >>>> runs w/the debug build aren't showing any differences from >>>> what I got earlier. However, I did do a run w/the --bind-to core >>>> switch and was surprised to see that hyperthreading cores were >>>> sometimes being used. >>>> >>>> Here's the traces that I have: >>>> >>>> mpirun -np 132 -report-bindings --prefix /hpc/apps/mpi/openmpi/1.8.6/ >>>> --hostfile hostfile-noslots --mca btl_tcp_if_include eth0 --hetero-nodes >>>> /hpc/home/lanew/mpi/openmpi/ProcessColors3 >>>> [csclprd3-0-5:16802] MCW rank 44 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-5:16802] MCW rank 45 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-5:16802] MCW rank 46 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-6-5:12480] MCW rank 4 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]]: [B/B][./.] >>>> [csclprd3-6-5:12480] MCW rank 5 bound to socket 1[core 2[hwt 0]], >>>> socket 1[core 3[hwt 0]]: [./.][B/B] >>>> [csclprd3-6-5:12480] MCW rank 6 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]]: [B/B][./.] >>>> [csclprd3-6-5:12480] MCW rank 7 bound to socket 1[core 2[hwt 0]], >>>> socket 1[core 3[hwt 0]]: [./.][B/B] >>>> [csclprd3-0-5:16802] MCW rank 47 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-5:16802] MCW rank 48 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-5:16802] MCW rank 49 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-1:14318] MCW rank 22 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-1:14318] MCW rank 23 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-1:14318] MCW rank 24 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-6-1:24682] MCW rank 3 bound to socket 1[core 2[hwt 0]], >>>> socket 1[core 3[hwt 0]]: [./.][B/B] >>>> [csclprd3-6-1:24682] MCW rank 0 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]]: [B/B][./.] >>>> [csclprd3-0-1:14318] MCW rank 25 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-1:14318] MCW rank 20 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-3:13827] MCW rank 34 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-1:14318] MCW rank 21 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-3:13827] MCW rank 35 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-6-1:24682] MCW rank 1 bound to socket 1[core 2[hwt 0]], >>>> socket 1[core 3[hwt 0]]: [./.][B/B] >>>> [csclprd3-0-3:13827] MCW rank 36 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-6-1:24682] MCW rank 2 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]]: [B/B][./.] >>>> [csclprd3-0-6:30371] MCW rank 51 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-6:30371] MCW rank 52 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-6:30371] MCW rank 53 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-2:05825] MCW rank 30 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-6:30371] MCW rank 54 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-3:13827] MCW rank 37 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-2:05825] MCW rank 31 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-3:13827] MCW rank 32 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-6:30371] MCW rank 55 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-3:13827] MCW rank 33 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-6:30371] MCW rank 50 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-2:05825] MCW rank 26 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-2:05825] MCW rank 27 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-2:05825] MCW rank 28 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-2:05825] MCW rank 29 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-12:12383] MCW rank 121 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-12:12383] MCW rank 122 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-12:12383] MCW rank 123 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-12:12383] MCW rank 124 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-12:12383] MCW rank 125 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-12:12383] MCW rank 120 is not bound (or bound to all >>>> available processors) >>>> [csclprd3-0-0:31079] MCW rank 13 bound to socket 1[core 6[hwt 0]], >>>> socket 1[core 7[hwt 0]], socket 1[core 8[hwt 0]], socket 1[core 9[hwt 0]], >>>> socket 1[core 10[hwt 0]], socket 1[core 11[hwt 0]]: >>>> [./././././.][B/B/B/B/B/B] >>>> [csclprd3-0-0:31079] MCW rank 14 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], socket 0[core 3[hwt 0]], >>>> socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]]: >>>> [B/B/B/B/B/B][./././././.] >>>> [csclprd3-0-0:31079] MCW rank 15 bound to socket 1[core 6[hwt 0]], >>>> socket 1[core 7[hwt 0]], socket 1[core 8[hwt 0]], socket 1[core 9[hwt 0]], >>>> socket 1[core 10[hwt 0]], socket 1[core 11[hwt 0]]: >>>> [./././././.][B/B/B/B/B/B] >>>> [csclprd3-0-0:31079] MCW rank 16 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], socket 0[core 3[hwt 0]], >>>> socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]]: >>>> [B/B/B/B/B/B][./././././.] >>>> [csclprd3-0-7:20515] MCW rank 68 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-10:19096] MCW rank 100 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-7:20515] MCW rank 69 bound to socket 1[core 8[hwt 0-1]], >>>> socket 1[core 9[hwt 0-1]], socket 1[core 10[hwt 0-1]], socket 1[core 11[hwt >>>> 0-1]], socket 1[core 12[hwt 0-1]], socket 1[core 13[hwt 0-1]], socket >>>> 1[core 14[hwt 0-1]], socket 1[core 15[hwt 0-1]]: >>>> [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>>> [csclprd3-0-10:19096] MCW rank 101 bound to socket 1[core 8[hwt 0-1]], >>>> socket 1[core 9[hwt 0-1]], socket 1[core 10[hwt 0-1]], socket 1[core 11[hwt >>>> 0-1]], socket 1[core 12[hwt 0-1]], socket 1[core 13[hwt 0-1]], socket >>>> 1[core 14[hwt 0-1]], socket 1[core 15[hwt 0-1]]: >>>> [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>>> [csclprd3-0-0:31079] MCW rank 17 bound to socket 1[core 6[hwt 0]], >>>> socket 1[core 7[hwt 0]], socket 1[core 8[hwt 0]], socket 1[core 9[hwt 0]], >>>> socket 1[core 10[hwt 0]], socket 1[core 11[hwt 0]]: >>>> [./././././.][B/B/B/B/B/B] >>>> [csclprd3-0-7:20515] MCW rank 70 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-10:19096] MCW rank 102 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-11:31636] MCW rank 116 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-11:31636] MCW rank 117 bound to socket 1[core 8[hwt 0-1]], >>>> socket 1[core 9[hwt 0-1]], socket 1[core 10[hwt 0-1]], socket 1[core 11[hwt >>>> 0-1]], socket 1[core 12[hwt 0-1]], socket 1[core 13[hwt 0-1]], socket >>>> 1[core 14[hwt 0-1]], socket 1[core 15[hwt 0-1]]: >>>> [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>>> [csclprd3-0-0:31079] MCW rank 18 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], socket 0[core 3[hwt 0]], >>>> socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]]: >>>> [B/B/B/B/B/B][./././././.] >>>> [csclprd3-0-11:31636] MCW rank 118 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-0:31079] MCW rank 19 bound to socket 1[core 6[hwt 0]], >>>> socket 1[core 7[hwt 0]], socket 1[core 8[hwt 0]], socket 1[core 9[hwt 0]], >>>> socket 1[core 10[hwt 0]], socket 1[core 11[hwt 0]]: >>>> [./././././.][B/B/B/B/B/B] >>>> [csclprd3-0-7:20515] MCW rank 71 bound to socket 1[core 8[hwt 0-1]], >>>> socket 1[core 9[hwt 0-1]], socket 1[core 10[hwt 0-1]], socket 1[core 11[hwt >>>> 0-1]], socket 1[core 12[hwt 0-1]], socket 1[core 13[hwt 0-1]], socket >>>> 1[core 14[hwt 0-1]], socket 1[core 15[hwt 0-1]]: >>>> [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>>> [csclprd3-0-10:19096] MCW rank 103 bound to socket 1[core 8[hwt 0-1]], >>>> socket 1[core 9[hwt 0-1]], socket 1[core 10[hwt 0-1]], socket 1[core 11[hwt >>>> 0-1]], socket 1[core 12[hwt 0-1]], socket 1[core 13[hwt 0-1]], socket >>>> 1[core 14[hwt 0-1]], socket 1[core 15[hwt 0-1]]: >>>> [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>>> [csclprd3-0-0:31079] MCW rank 8 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], socket 0[core 3[hwt 0]], >>>> socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]]: >>>> [B/B/B/B/B/B][./././././.] >>>> [csclprd3-0-0:31079] MCW rank 9 bound to socket 1[core 6[hwt 0]], >>>> socket 1[core 7[hwt 0]], socket 1[core 8[hwt 0]], socket 1[core 9[hwt 0]], >>>> socket 1[core 10[hwt 0]], socket 1[core 11[hwt 0]]: >>>> [./././././.][B/B/B/B/B/B] >>>> [csclprd3-0-10:19096] MCW rank 88 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-11:31636] MCW rank 119 bound to socket 1[core 8[hwt 0-1]], >>>> socket 1[core 9[hwt 0-1]], socket 1[core 10[hwt 0-1]], socket 1[core 11[hwt >>>> 0-1]], socket 1[core 12[hwt 0-1]], socket 1[core 13[hwt 0-1]], socket >>>> 1[core 14[hwt 0-1]], socket 1[core 15[hwt 0-1]]: >>>> [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>>> [csclprd3-0-7:20515] MCW rank 56 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-0:31079] MCW rank 10 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], socket 0[core 3[hwt 0]], >>>> socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]]: >>>> [B/B/B/B/B/B][./././././.] >>>> [csclprd3-0-7:20515] MCW rank 57 bound to socket 1[core 8[hwt 0-1]], >>>> socket 1[core 9[hwt 0-1]], socket 1[core 10[hwt 0-1]], socket 1[core 11[hwt >>>> 0-1]], socket 1[core 12[hwt 0-1]], socket 1[core 13[hwt 0-1]], socket >>>> 1[core 14[hwt 0-1]], socket 1[core 15[hwt 0-1]]: >>>> [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>>> [csclprd3-0-10:19096] MCW rank 89 bound to socket 1[core 8[hwt 0-1]], >>>> socket 1[core 9[hwt 0-1]], socket 1[core 10[hwt 0-1]], socket 1[core 11[hwt >>>> 0-1]], socket 1[core 12[hwt 0-1]], socket 1[core 13[hwt 0-1]], socket >>>> 1[core 14[hwt 0-1]], socket 1[core 15[hwt 0-1]]: >>>> [../../../../../../../..][BB/BB/BB/BB/BB/BB/BB/BB] >>>> [csclprd3-0-11:31636] MCW rank 104 bound to socket 0[core 0[hwt 0-1]], >>>> socket 0[core 1[hwt 0-1]], socket 0[core 2[hwt 0-1]], socket 0[core 3[hwt >>>> 0-1]], socket 0[core 4[hwt 0-1]], socket 0[core 5[hwt 0-1]], socket 0[core >>>> 6[hwt 0-1]], socket 0[core 7[hwt 0-1]]: >>>> [BB/BB/BB/BB/BB/BB/BB/BB][../../../../../../../..] >>>> [csclprd3-0-0:31079] MCW rank 11 bound to socket 1[core 6[hwt 0]], >>>> socket 1[core 7[hwt 0]], socket 1[core 8[hwt 0]], socket 1[core 9[hwt 0]], >>>> socket 1[core 10[hwt 0]], socket 1[core 11[hwt 0]]: >>>> [./././././.][B/B/B/B/B/B] >>>> [csclprd3-0-0:31079] MCW rank 12 bound to socket 0[core 0[hwt 0]], >>>> socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], socket 0[core 3[hwt 0]], >>>> socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]]: >>>> [B/B/B/B/B/B][./././././.] >>>> [csclprd3-0-4:30348] MCW rank 42 is not bound (or bound to all >>>> >>> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2015/06/27185.php >> > > IMPORTANT WARNING: This message is intended for the use of the person > or entity to which it is addressed and may contain information that is > privileged and confidential, the disclosure of which is governed by > applicable law. If the reader of this message is not the intended > recipient, or the employee or agent responsible for delivering it to the > intended recipient, you are hereby notified that any dissemination, > distribution or copying of this information is strictly prohibited. Thank > you for your cooperation. > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2015/06/27204.php > > > IMPORTANT WARNING: This message is intended for the use of the person > or entity to which it is addressed and may contain information that is > privileged and confidential, the disclosure of which is governed by > applicable law. If the reader of this message is not the intended > recipient, or the employee or agent responsible for delivering it to the > intended recipient, you are hereby notified that any dissemination, > distribution or copying of this information is strictly prohibited. Thank > you for your cooperation. > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2015/06/27220.php >
