Thanks Jeff! but in this line:
https://github.com/open-mpi/ompi/blob/master/config/ompi_check_mxm.m4#L36 ompi_check_mxm_libdir gets value if with_mxm was passed On Tue, May 26, 2015 at 6:59 PM, Jeff Squyres (jsquyres) <jsquy...@cisco.com > wrote: > This line: > > > https://github.com/open-mpi/ompi/blob/master/config/ompi_check_mxm.m4#L41 > > doesn't check to see if $ompi_check_mxm_libdir is empty. > > > > On May 26, 2015, at 11:50 AM, Mike Dubman <mi...@dev.mellanox.co.il> > wrote: > > > > David, > > Could you please send me your config.log file? > > > > Looking into config/ompi_check_mxm.m4 macro I don`t understand how it > could happen. > > > > Thanks a lot. > > > > On Tue, May 26, 2015 at 6:41 PM, Mike Dubman <mi...@dev.mellanox.co.il> > wrote: > > Hello David, > > Thanks for info and patch - will fix ompi configure logic with your > patch. > > > > mxm can be installed in the system and user spaces - both are valid and > supported logic. > > > > M > > > > On Tue, May 26, 2015 at 5:50 PM, David Shrader <dshra...@lanl.gov> > wrote: > > Hello Mike, > > > > This particular instance of mxm was installed using rpms that were > re-rolled by our admins. I'm not 100% sure where they got them (HPCx or > somewhere else). I myself am not using HPCx. Is there any particular reason > why mxm shouldn't be in system space? If there is, I'll share it with our > admins and try to get the install location corrected. > > > > As for what is causing the extra -L, it does look like an empty variable > is used without checking that it is empty in configure. Line 246117 in the > configure script provided by the openmpi-1.8.5.tar.bz2 tarball has this: > > > > ompi_check_mxm_extra_libs="-L$ompi_check_mxm_libdir" > > > > By invoking configure with '/bin/sh -x ./configure ...' and changing PS4 > to output line numbers, I saw that line 246117 was setting > ompi_check_mxm_extra_libs to just "-L". It turns out that configure does > this in three separate locations. I put a check around all three instances > like this: > > > > if test ! -z "$ompi_check_mxm_extra_libs"; then > > ompi_check_mxm_extra_libs="-L$ompi_check_mxm_libdir" > > fi > > > > And the spurious '-L' disappeared from the linking commands and make > completed fine. > > > > So, it looks like there are two solutions: move the install location of > mxm to not be in system-space or modify configure. Which one would be the > better one for me to pursue? > > > > Thanks, > > David > > > > > > On 05/23/2015 12:05 AM, Mike Dubman wrote: > >> Hi, > >> > >> How mxm was installed? by copying? > >> > >> The rpm based installation places mxm into /opt/mellanox/mxm and not > into /usr/lib64/libmxm.so. > >> > >> Do you use HPCx (pack of OMPI and MXM and FCA)? > >> You can download HPCX, extract it anywhere and compile OMPI pointing to > mxm location under HPCX. > >> > >> Also, HPCx contains rpms for mxm and fca. > >> > >> > >> M > >> > >> On Sat, May 23, 2015 at 1:07 AM, David Shrader <dshra...@lanl.gov> > wrote: > >> Hello, > >> > >> I'm getting a spurious '-L' flag when I have mxm installed in > system-space (/usr/lib64/libmxm.so) which is causing an error at link time > during make: > >> > >> ...output snipped... > >> /bin/sh ../../../../libtool --tag=CC --mode=link gcc -std=gnu99 -O3 > -DNDEBUG -I/opt/panfs/include -finline-functions -fno-strict-aliasing > -pthread -module -avoid-version -o libmca_mtl_mxm.la mtl_mxm.lo > mtl_mxm_cancel.lo mtl_mxm_component.lo mtl_mxm_endpoint.lo mtl_mxm_probe.lo > mtl_mxm_recv.lo mtl_mxm_send.lo -lmxm -L -lrt -lm -lutil > >> libtool: link: require no space between `-L' and `-lrt' > >> make[2]: *** [libmca_mtl_mxm.la] Error 1 > >> make[2]: Leaving directory > `/turquoise/usr/projects/hpctools/dshrader/hpcsoft/openmpi/1.8.5/openmpi-1.8.5/ompi/mca/mtl/mxm' > >> make[1]: *** [all-recursive] Error 1 > >> make[1]: Leaving directory > `/turquoise/usr/projects/hpctools/dshrader/hpcsoft/openmpi/1.8.5/openmpi-1.8.5/ompi' > >> make: *** [all-recursive] Error 1 > >> > >> If I I use --with-mxm=no, then this error doesn't occur (as expected as > the mxm component isn't touched). Has anyone run in to this before? > >> > >> Here is my configure line: > >> > >> ./configure --disable-silent-rules > --with-platform=contrib/platform/lanl/toss/optimized-panasas --prefix=... > >> > >> I wonder if there is an empty variable that should contain the > directory libmxm is in somewhere in configure since no directory is passed > to --with-mxm which is then paired with a "-L". I think I'll go through the > configure script while waiting to see if anyone else has run in to this. > >> > >> Thank you for any and all help, > >> David > >> > >> -- > >> David Shrader > >> HPC-3 High Performance Computer Systems > >> Los Alamos National Lab > >> Email: dshrader <at> lanl.gov > >> > >> _______________________________________________ > >> users mailing list > >> us...@open-mpi.org > >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > >> Link to this post: > http://www.open-mpi.org/community/lists/users/2015/05/26904.php > >> > >> > >> > >> -- > >> > >> Kind Regards, > >> > >> M. > >> > >> > >> _______________________________________________ > >> users mailing list > >> > >> us...@open-mpi.org > >> > >> Subscription: > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> Link to this post: > >> http://www.open-mpi.org/community/lists/users/2015/05/26905.php > > > > -- > > David Shrader > > HPC-3 High Performance Computer Systems > > Los Alamos National Lab > > Email: dshrader <at> > > lanl.gov > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > > Link to this post: > http://www.open-mpi.org/community/lists/users/2015/05/26936.php > > > > > > > > -- > > > > Kind Regards, > > > > M. > > > > > > > > -- > > > > Kind Regards, > > > > M. > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > > Link to this post: > http://www.open-mpi.org/community/lists/users/2015/05/26938.php > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2015/05/26940.php > -- Kind Regards, M.
