Hello, 1. I'm using Java/Javac version 1.8.0_20 under OS X 10.10.2.
2. I have used the following configuration for making OpenMPI: ./configure --enable-mpi-java --with-jdk-bindir="/System/Library/Frameworks/JavaVM.framework/Versions/Current/Commands" --with-jdk-headers="/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers" --prefix="/users/hamidreza/openmpi-1.8.4" make all install 3. As a logical point of view, size2 is the maximum expected data to receive, which in turn might be less that this maximum. 4. I will try to prepare a working reproducer of my error and send it to you. Thanks, -- HR On Mon, Apr 6, 2015 at 10:46 AM, Ralph Castain <r...@open-mpi.org> wrote: > I've talked to the folks who wrote the Java bindings. One possibility we > identified is that there may be an error in your code when you did the > translation > > My immediate thought is that each process can not receive more elements > than it was sent to them. That's the reason of truncation error. > > These are the correct values: > > rank 0 - size2: 2,2,1,1 > rank 1 - size2: 1,1,1,1 > rank 2 - size2: 0,1,1,2 > rank 3 - size2: 2,1,2,1 > > > Can you check your code to see if perhaps the values you are passing > didn't get translated correctly from your C++ version to the Java version? > > > > On Apr 6, 2015, at 5:03 AM, Howard Pritchard <hpprit...@gmail.com> wrote: > > Hello HR, > > It would also be useful to know which java version you are using, as well > as the configure options used when building open mpi. > > Thanks, > > Howard > > > > 2015-04-05 19:10 GMT-06:00 Ralph Castain <r...@open-mpi.org>: > >> If not too much trouble, can you extract just the alltoallv portion and >> provide us with a small reproducer? >> >> >> On Apr 5, 2015, at 12:11 PM, Hamidreza Anvari <hr.anv...@gmail.com> >> wrote: >> >> Hello, >> >> I am converting an existing MPI program in C++ to Java using OpenMPI >> 1.8.4, >> At some point I have a allToAllv() code which works fine in C++ but >> receives error in Java version: >> >> MPI.COMM_WORLD.allToAllv(data, subpartition_size, subpartition_offset, >> MPI.INT <http://mpi.int/>, >> data2,subpartition_size2,subpartition_offset2,MPI.INT <http://mpi.int/>); >> >> Error: >> *** An error occurred in MPI_Alltoallv >> *** reported by process [3621322753,9223372036854775811] >> *** on communicator MPI_COMM_WORLD >> *** MPI_ERR_TRUNCATE: message truncated >> *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, >> *** and potentially your MPI job) >> 3 more processes have sent help message help-mpi-errors.txt / >> mpi_errors_are_fatal >> Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error >> messages >> >> Here are the values for parameters: >> >> data.length = 5 >> data2.length = 20 >> >> ---------- Rank 0 of 4 ---------- >> subpartition_offset:0,2,3,3, >> subpartition_size:2,1,0,2, >> subpartition_offset2:0,5,10,15, >> subpartition_size2:5,5,5,5, >> ---------- >> ---------- Rank 1 of 4 ---------- >> subpartition_offset:0,2,3,4, >> subpartition_size:2,1,1,1, >> subpartition_offset2:0,5,10,15, >> subpartition_size2:5,5,5,5, >> ---------- >> ---------- Rank 2 of 4 ---------- >> subpartition_offset:0,1,2,3, >> subpartition_size:1,1,1,2, >> subpartition_offset2:0,5,10,15, >> subpartition_size2:5,5,5,5, >> ---------- >> ---------- Rank 3 of 4 ---------- >> subpartition_offset:0,1,2,4, >> subpartition_size:1,1,2,1, >> subpartition_offset2:0,5,10,15, >> subpartition_size2:5,5,5,5, >> ---------- >> >> Again, this is a code which works in C++ version. >> >> Any help or advice is greatly appreciated. >> >> Thanks, >> -- HR >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2015/04/26610.php >> >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2015/04/26613.php >> > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2015/04/26615.php > > > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2015/04/26616.php >
