hi Jeff, this was very helpful. Thank you very much indeed. Only tweak is that I had to type
sudo rm .rf/usr/local/lib/openmpi I reinstalled openmpi and the code is now running seamless. Thanks again. Javier On 25 Feb 2015, at 14:29, Jeff Squyres (jsquyres) <jsquy...@cisco.com> wrote: > If you had an older Open MPI installed into /usr/local before you installed > Open MPI 1.8.4 into /usr/local, it's quite possible that some of the older > plugins are still there (and will not play nicely with the 1.8.4 install). > > Specifically: installing a new Open MPI does not uninstall an older Open MPI. > > What you can probably do is > > rm -rf /usr/local/lib/openmpi > > This will completely delete *all* Open MPI plugins (both new and old) from > the /usr/local tree. > > Then re-install the 1.8.4 again, and see if that works for you. > > > >> On Feb 25, 2015, at 7:52 AM, Javier Mas Solé <javier.mas.s...@gmail.com> >> wrote: >> >> I have a fresh install of openmpi-1.8.4 in a Mac with OSX-10.9.5. It >> compiled and installed fine. >> I have a Fortran code that runs perfectly on another similar machine with >> openmpi-1.6.5. It compiled >> without error in the new Mac. When I want to mpirun, it gives the >> following message below. >> >> Also if i write echo $PATH I can spot the combinations us/local/bin which >> was a warning in the installation instructions. >> I have read in other forums that this might signal a duplicity of versions >> openmpi. I cannot rule this out, although >> I don’t find any duplicate in the use/local/bin folder. >> >> I’m thinking of uninstalling this version and installing the 1.6.5 which >> works fine. >> ¿Anyone can tell me how to do this uninstall? >> >> Thanks a lot >> >> Javier >> >> I have seen a similar post to this one >> >> fpmac114:AdSHW javier$ /usr/local/bin/mpirun sim1.exe >> [fpmac114.inv.usc.es:00398] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_ess_slurmd: >> dlopen(/usr/local/lib/openmpi/mca_ess_slurmd.so, 9): Symbol not found: >> _orte_jmap_t_class >> Referenced from: /usr/local/lib/openmpi/mca_ess_slurmd.so >> Expected in: flat namespace >> in /usr/local/lib/openmpi/mca_ess_slurmd.so (ignored) >> [fpmac114.inv.usc.es:00398] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_errmgr_default: >> dlopen(/usr/local/lib/openmpi/mca_errmgr_default.so, 9): Symbol not found: >> _orte_errmgr_base_error_abort >> Referenced from: /usr/local/lib/openmpi/mca_errmgr_default.so >> Expected in: flat namespace >> in /usr/local/lib/openmpi/mca_errmgr_default.so (ignored) >> [fpmac114.inv.usc.es:00398] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_routed_cm: >> dlopen(/usr/local/lib/openmpi/mca_routed_cm.so, 9): Symbol not found: >> _orte_message_event_t_class >> Referenced from: /usr/local/lib/openmpi/mca_routed_cm.so >> Expected in: flat namespace >> in /usr/local/lib/openmpi/mca_routed_cm.so (ignored) >> [fpmac114.inv.usc.es:00398] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_routed_linear: >> dlopen(/usr/local/lib/openmpi/mca_routed_linear.so, 9): Symbol not found: >> _orte_message_event_t_class >> Referenced from: /usr/local/lib/openmpi/mca_routed_linear.so >> Expected in: flat namespace >> in /usr/local/lib/openmpi/mca_routed_linear.so (ignored) >> [fpmac114.inv.usc.es:00398] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_grpcomm_basic: >> dlopen(/usr/local/lib/openmpi/mca_grpcomm_basic.so, 9): Symbol not found: >> _opal_profile >> Referenced from: /usr/local/lib/openmpi/mca_grpcomm_basic.so >> Expected in: flat namespace >> in /usr/local/lib/openmpi/mca_grpcomm_basic.so (ignored) >> [fpmac114.inv.usc.es:00398] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_grpcomm_hier: >> dlopen(/usr/local/lib/openmpi/mca_grpcomm_hier.so, 9): Symbol not found: >> _orte_daemon_cmd_processor >> Referenced from: /usr/local/lib/openmpi/mca_grpcomm_hier.so >> Expected in: flat namespace >> in /usr/local/lib/openmpi/mca_grpcomm_hier.so (ignored) >> [fpmac114.inv.usc.es:00398] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_filem_rsh: >> dlopen(/usr/local/lib/openmpi/mca_filem_rsh.so, 9): Symbol not found: >> _opal_uses_threads >> Referenced from: /usr/local/lib/openmpi/mca_filem_rsh.so >> Expected in: flat namespace >> in /usr/local/lib/openmpi/mca_filem_rsh.so (ignored) >> [fpmac114:00398] *** Process received signal *** >> [fpmac114:00398] Signal: Segmentation fault: 11 (11) >> [fpmac114:00398] Signal code: Address not mapped (1) >> [fpmac114:00398] Failing at address: 0x100000013 >> [fpmac114:00398] [ 0] 0 libsystem_platform.dylib >> 0x00007fff933125aa _sigtramp + 26 >> [fpmac114:00398] [ 1] 0 ??? >> 0x00007fff5b7f00ff 0x0 + 140734728438015 >> [fpmac114:00398] [ 2] 0 libopen-rte.7.dylib >> 0x0000000104469ee5 orte_rmaps_base_map_job + 1525 >> [fpmac114:00398] [ 3] 0 libopen-pal.6.dylib >> 0x00000001044e4346 opal_libevent2021_event_base_loop + 2214 >> [fpmac114:00398] [ 4] 0 mpirun >> 0x0000000104411bc0 orterun + 6320 >> [fpmac114:00398] [ 5] 0 mpirun >> 0x00000001044102f2 main + 34 >> [fpmac114:00398] [ 6] 0 libdyld.dylib >> 0x00007fff8d08a5fd start + 1 >> [fpmac114:00398] [ 7] 0 ??? >> 0x0000000000000002 0x0 + 2 >> [fpmac114:00398] *** End of error message *** >> Segmentation fault: 11 >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2015/02/26394.php > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2015/02/26395.php
