Hello all,
Our clusters were just upgraded to both a new version of PGI (14.9) as well as
openmpi (1.8.3). Previous versions were 12.1 and 1.6 respectively, and those
compiled and linked just fine. The newest versions are not linking my mpi
applications at all. Here's the problem:
/opt/scyld/openmpi/1.8.3/pgi/bin/mpif90 -C chemcode_mpi.o mod_mpichem.o
plume_mpi.o amb2D_mpi.o fex.o jex.o use_tuv.o run_lsode.o mod_amb.o utmgeo.o
lsode.o newamb.o plume.o amb2D.o solve.o mod_cdf.o calc_rates.o mod_tuv.o
flux.o amb1D.o amb_com.o newamb2D.o vs_ccode.o ck_errors.o newamb1D.o doChem.o
mod_lsode.o stode.o plume_com.o typeSizes.o netcdf.o mod_parameters.o
mod_chem.o runfile.o com_codes.o mod_SLAM.o mod_CPUFF.o calc_za.o
mod_releases.o mod_site.o mod_distance.o nuclear_dates.o mod_luparms.o
deposition.o diffusion.o getTJ.o mod_met.o met_data.o mod_h5tuv.o tuv10.o
mod_h5camx.o cmxamb.o \
-L/ensco/apps/cm/CMSOL/linux/zlib-1.2.1/lib
-L/ensco/apps/cm/CMSOL/linux/szip-2.1/lib -o \
chemcode_mpi -L/opt/pgi/linux86-64/14.9/lib -lpgf90 -lpgf90rtl \
-L/ensco/apps/cm/CMSOL/linux/hdf5-1.8.3/lib -lhdf5_fortran -l hdf5 -lz
-lm
/usr/lib64/libpsm_infinipath.so.1: undefined reference to `knem_put'
/usr/lib64/libpsm_infinipath.so.1: undefined reference to `knem_open_device'
/usr/lib64/libpsm_infinipath.so.1: undefined reference to `knem_get'
/usr/lib64/libpsm_infinipath.so.1: undefined reference to `knem_register_region'
I've searched the net for any information on this and nothing has seemed to
help. I'm fairly confident that all my variables and paths to the new software
is correct.
Any ideas?
Regards,
Mike
________________________________
The information contained in this email message is intended only for the use of
the individual(s) to whom it is addressed and may contain information that is
privileged and sensitive. If you are not the intended recipient, or otherwise
have received this communication in error, please notify the sender immediately
by email at the above referenced address and note that any further
dissemination, distribution or copying of this communication is strictly
prohibited.
The U.S. Export Control Laws regulate the export and re-export of technology
originating in the United States. This includes the electronic transmission of
information and software to foreign countries and to certain foreign nationals.
Recipient agrees to abide by these laws and their regulations -- including the
U.S. Department of Commerce Export Administration Regulations and the U.S.
Department of State International Traffic in Arms Regulations -- and not to
transfer, by electronic transmission or otherwise, any content derived from
this email to either a foreign national or a foreign destination in violation
of such laws.
