Hi,
I'm using Rocks 5.4.3 with SGE 6.1 I installed
a new version of openMPI 1.6.5 when I run
a script using SGE+openMPI (1.6.5) in a single node
I don't have any problems but when I try to use more nodes
I get this error:
A hostfile was provided that contains at least one node not
present in the allocation:
hostfile: /tmp/21202.1.parallel.q/machines
node: compute-2-4
If you are operating in a resource-managed environment, then only
nodes that are in the allocation can be used in the hostfile. You
may find relative node syntax to be a useful alternative to
specifying absolute node names see the orte_hosts man page for
further information.
--------------------------------------------------------------------------
rm: cannot remove `/tmp/21202.1.parallel.q/rsh': No such file or directory
--------------------------------------------------------------------------
I send also my SGE script:
#!/bin/bash
#$ -S /bin/bash
#$ -pe mpi 64
#$ -cwd
#$ -o ./file.out
#$ -e ./file.err
export LD_LIBRARY_PATH=/home/SWcbbc/openmpi-1.6.5/lib:$LD_LIBRARY_PATH
export OMP_NUM_THREADS=1
CPMD_PATH=/home/tanzi/myroot/X86_66intel-mpi/
PP_PATH=/home/tanzi
/home/SWcbbc/openmpi-1.6.5/bin/mpirun -np 64 -machinefile
$TMPDIR/machines
${CPMD_PATH}cpmd.x input ${PP_PATH}/PP/ > out
I don't understand my mistake
Regards D.
