I believe this was fixed in the trunk and is now scheduled to come across to 1.8.3
On Sep 2, 2014, at 4:21 AM, Siegmar Gross <siegmar.gr...@informatik.hs-fulda.de> wrote: > Hi, > > yesterday I installed openmpi-1.8.2 on my machines (Solaris 10 Sparc > (tyr), Solaris 10 x86_64 (sunpc0), and openSUSE Linux 12.1 x86_64 > (linpc0)) with Sun C 5.12. A small Java program works on Linux, > but breaks with a segmentation fault on Solaris 10. > > > tyr java 172 where mpijavac > mpijavac is aliased to \mpijavac -deprecation -Xlint:all > /usr/local/openmpi-1.8.2_64_cc/bin/mpijavac > tyr java 173 mpijavac InitFinalizeMain.java > tyr java 174 mpiexec -np 1 java InitFinalizeMain > # > # A fatal error has been detected by the Java Runtime Environment: > # > # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=28334, tid=2 > # > # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) > # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode > solaris-sparc compressed oops) > # Problematic frame: > # C [libc.so.1+0x3c7f0] strlen+0x50 > # > # Failed to write core dump. Core dumps have been disabled. To enable core > dumping, try "ulimit -c unlimited" > before starting Java again > # > # An error report file with more information is saved as: > # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid28334.log > # > # If you would like to submit a bug report, please visit: > # http://bugreport.sun.com/bugreport/crash.jsp > # The crash happened outside the Java Virtual Machine in native code. > # See problematic frame for where to report the bug. > # > -------------------------------------------------------------------------- > mpiexec noticed that process rank 0 with PID 28334 on node tyr exited on > signal 6 (Abort). > -------------------------------------------------------------------------- > tyr java 175 > > > > gbd shows the following backtrace for SunC 5.12. > > tyr java 175 /usr/local/gdb-7.6.1_64_gcc/bin/gdb > /usr/local/openmpi-1.8.2_64_cc/bin/mpiexec > GNU gdb (GDB) 7.6.1 > Copyright (C) 2013 Free Software Foundation, Inc. > License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> > This is free software: you are free to change and redistribute it. > There is NO WARRANTY, to the extent permitted by law. Type "show copying" > and "show warranty" for details. > This GDB was configured as "sparc-sun-solaris2.10". > For bug reporting instructions, please see: > <http://www.gnu.org/software/gdb/bugs/>... > Reading symbols from > /export2/prog/SunOS_sparc/openmpi-1.8.2_64_cc/bin/orterun...done. > (gdb) run -np 1 java InitFinalizeMain > Starting program: /usr/local/openmpi-1.8.2_64_cc/bin/mpiexec -np 1 java > InitFinalizeMain > [Thread debugging using libthread_db enabled] > [New Thread 1 (LWP 1)] > [New LWP 2 ] > # > # A fatal error has been detected by the Java Runtime Environment: > # > # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=28353, tid=2 > # > # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) > # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode > solaris-sparc compressed oops) > # Problematic frame: > # C [libc.so.1+0x3c7f0] strlen+0x50 > # > # Failed to write core dump. Core dumps have been disabled. To enable core > dumping, try "ulimit -c unlimited" > before starting Java again > # > # An error report file with more information is saved as: > # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid28353.log > # > # If you would like to submit a bug report, please visit: > # http://bugreport.sun.com/bugreport/crash.jsp > # The crash happened outside the Java Virtual Machine in native code. > # See problematic frame for where to report the bug. > # > -------------------------------------------------------------------------- > mpiexec noticed that process rank 0 with PID 28353 on node tyr exited on > signal 6 (Abort). > -------------------------------------------------------------------------- > [LWP 2 exited] > [New Thread 2 ] > [Switching to Thread 1 (LWP 1)] > sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to > satisfy query > (gdb) bt > #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from /usr/lib/sparcv9/ld.so.1 > #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1 > #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1 > #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1 > #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1 > #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1 > #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1 > #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1 > #8 0xffffffff7e8cb348 in vm_close () > from /usr/local/openmpi-1.8.2_64_cc/lib64/libopen-pal.so.6 > #9 0xffffffff7e8c8634 in lt_dlclose () > from /usr/local/openmpi-1.8.2_64_cc/lib64/libopen-pal.so.6 > #10 0xffffffff7e91edcc in ri_destructor (obj=0xff) > at > ../../../../openmpi-1.8.2/opal/mca/base/mca_base_component_repository.c:391 > #11 0xffffffff7e91c5a0 in opal_obj_run_destructors (object=0xffffff7c701d00ff) > at ../../../../openmpi-1.8.2/opal/class/opal_object.h:446 > #12 0xffffffff7e91e61c in mca_base_component_repository_release > (component=0x10ff) > at > ../../../../openmpi-1.8.2/opal/mca/base/mca_base_component_repository.c:244 > #13 0xffffffff7e924c78 in mca_base_component_unload > (component=0xffffff7f73c63800, > output_id=67583) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_components_close.c:47 > #14 0xffffffff7e924d1c in mca_base_component_close > (component=0xffffff0000000100, > output_id=268480767) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_components_close.c:60 > #15 0xffffffff7e924e2c in mca_base_components_close (output_id=1947894015, > components=0xffffff7f501368ff, skip=0x2ff) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_components_close.c:86 > #16 0xffffffff7e924d6c in mca_base_framework_components_close ( > framework=0xffffff7d7455d4ff, skip=0xffffff7f200a90ff) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_components_close.c:68 > #17 0xffffffff7ee1d690 in orte_oob_base_close () > at ../../../../openmpi-1.8.2/orte/mca/oob/base/oob_base_frame.c:94 > #18 0xffffffff7e954ac0 in mca_base_framework_close > (framework=0xffffff0000004b00) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_framework.c:187 > #19 0xffffffff7be139fc in rte_finalize () > at ../../../../../openmpi-1.8.2/orte/mca/ess/hnp/ess_hnp_module.c:858 > #20 0xffffffff7ec38154 in orte_finalize () > at ../../openmpi-1.8.2/orte/runtime/orte_finalize.c:65 > #21 0x000000010000ddf0 in orterun (argc=3327, argv=0x0) > at ../../../../openmpi-1.8.2/orte/tools/orterun/orterun.c:1096 > #22 0x0000000100004614 in main (argc=255, argv=0xffffff7f077de800) > at ../../../../openmpi-1.8.2/orte/tools/orterun/main.c:13 > (gdb) > > > > > > gbd shows the following backtrace for gcc-4.9.0. > > tyr java 108 mpijavac InitFinalizeMain.java > tyr java 109 /usr/local/gdb-7.6.1_64_gcc/bin/gdb > /usr/local/openmpi-1.8.2_64_gcc/bin/mpiexec > GNU gdb (GDB) 7.6.1 > Copyright (C) 2013 Free Software Foundation, Inc. > License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> > This is free software: you are free to change and redistribute it. > There is NO WARRANTY, to the extent permitted by law. Type "show copying" > and "show warranty" for details. > This GDB was configured as "sparc-sun-solaris2.10". > For bug reporting instructions, please see: > <http://www.gnu.org/software/gdb/bugs/>... > Reading symbols from > /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/bin/orterun...done. > (gdb) run -np 1 java InitFinalizeMain > Starting program: /usr/local/openmpi-1.8.2_64_gcc/bin/mpiexec -np 1 java > InitFinalizeMain > [Thread debugging using libthread_db enabled] > [New Thread 1 (LWP 1)] > [New LWP 2 ] > # > # A fatal error has been detected by the Java Runtime Environment: > # > # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=28454, tid=2 > # > # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) > # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode > solaris-sparc compressed oops) > # Problematic frame: > # C [libc.so.1+0x3c7f0] strlen+0x50 > # > # Failed to write core dump. Core dumps have been disabled. To enable core > dumping, try "ulimit -c unlimited" > before starting Java again > # > # An error report file with more information is saved as: > # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid28454.log > # > # If you would like to submit a bug report, please visit: > # http://bugreport.sun.com/bugreport/crash.jsp > # The crash happened outside the Java Virtual Machine in native code. > # See problematic frame for where to report the bug. > # > -------------------------------------------------------------------------- > mpiexec noticed that process rank 0 with PID 28454 on node tyr exited on > signal 6 (Abort). > -------------------------------------------------------------------------- > [LWP 2 exited] > [New Thread 2 ] > [Switching to Thread 1 (LWP 1)] > sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to > satisfy query > (gdb) bt > #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from /usr/lib/sparcv9/ld.so.1 > #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1 > #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1 > #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1 > #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1 > #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1 > #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1 > #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1 > #8 0xffffffff7ec77474 in vm_close () > from /usr/local/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6 > #9 0xffffffff7ec74a54 in lt_dlclose () > from /usr/local/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6 > #10 0xffffffff7ec99b78 in ri_destructor (obj=0x1001ead80) > at > ../../../../openmpi-1.8.2/opal/mca/base/mca_base_component_repository.c:391 > #11 0xffffffff7ec98490 in opal_obj_run_destructors (object=0x1001ead80) > at ../../../../openmpi-1.8.2/opal/class/opal_object.h:446 > #12 0xffffffff7ec993f4 in mca_base_component_repository_release ( > component=0xffffffff7b023ef0 <mca_oob_tcp_component>) > at > ../../../../openmpi-1.8.2/opal/mca/base/mca_base_component_repository.c:244 > #13 0xffffffff7ec9b73c in mca_base_component_unload ( > component=0xffffffff7b023ef0 <mca_oob_tcp_component>, output_id=-1) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_components_close.c:47 > #14 0xffffffff7ec9b7d0 in mca_base_component_close ( > component=0xffffffff7b023ef0 <mca_oob_tcp_component>, output_id=-1) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_components_close.c:60 > #15 0xffffffff7ec9b8a4 in mca_base_components_close (output_id=-1, > components=0xffffffff7f12b030 <orte_oob_base_framework+80>, skip=0x0) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_components_close.c:86 > #16 0xffffffff7ec9b80c in mca_base_framework_components_close ( > framework=0xffffffff7f12afe0 <orte_oob_base_framework>, skip=0x0) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_components_close.c:66 > #17 0xffffffff7efae0e8 in orte_oob_base_close () > at ../../../../openmpi-1.8.2/orte/mca/oob/base/oob_base_frame.c:94 > #18 0xffffffff7ecb28b4 in mca_base_framework_close ( > framework=0xffffffff7f12afe0 <orte_oob_base_framework>) > at ../../../../openmpi-1.8.2/opal/mca/base/mca_base_framework.c:187 > #19 0xffffffff7bf078c0 in rte_finalize () > at ../../../../../openmpi-1.8.2/orte/mca/ess/hnp/ess_hnp_module.c:858 > #20 0xffffffff7ef30924 in orte_finalize () > at ../../openmpi-1.8.2/orte/runtime/orte_finalize.c:65 > #21 0x00000001000070c4 in orterun (argc=5, argv=0xffffffff7fffe0f8) > at ../../../../openmpi-1.8.2/orte/tools/orterun/orterun.c:1096 > #22 0x0000000100003d70 in main (argc=5, argv=0xffffffff7fffe0f8) > at ../../../../openmpi-1.8.2/orte/tools/orterun/main.c:13 > (gdb) > > > > I would be grateful, if somebody can fix the problem. Thank you > very much for any help in advance. > > > Kind regards > > Siegmar > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2014/09/25214.php
