Would you please try r32662? I believe I finally found and fixed this problem.
On Sep 2, 2014, at 6:12 AM, Siegmar Gross <siegmar.gr...@informatik.hs-fulda.de> wrote: > Hi, > > yesterday I installed openmpi-1.9a1r32657 on my machines (Solaris > 10 Sparc (tyr), Solaris 10 x86_64 (sunpc0), and openSUSE Linux 12.1 > x86_64 (linpc0)) with Sun C 5.12 and gcc-4.9.0. > > I have the following problems with my gcc version. First once more > my problems with Java and below my problems with C. In my opinion > I have the same problems as with Sun C. > > > > Java problem: > ============= > > tyr java 106 mpijavac InitFinalizeMain.java > warning: [path] bad path element > "/usr/local/openmpi-1.9_64_gcc/lib64/shmem.jar": no such file or directory > 1 warning > tyr java 107 mpiexec -np 1 java InitFinalizeMain > # > # A fatal error has been detected by the Java Runtime Environment: > # > # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=774, tid=2 > # > # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) > # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode > solaris-sparc compressed oops) > # Problematic frame: > # C [libc.so.1+0x3c7f0] strlen+0x50 > # > # Failed to write core dump. Core dumps have been disabled. To enable core > dumping, try "ulimit -c unlimited" before > starting Java again > # > # An error report file with more information is saved as: > # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid774.log > # > # If you would like to submit a bug report, please visit: > # http://bugreport.sun.com/bugreport/crash.jsp > # The crash happened outside the Java Virtual Machine in native code. > # See problematic frame for where to report the bug. > # > -------------------------------------------------------------------------- > mpiexec noticed that process rank 0 with PID 774 on node tyr exited on signal > 6 (Abort). > -------------------------------------------------------------------------- > tyr java 108 /usr/local/gdb-7.6.1_64_gcc/bin/gdb > /usr/local/openmpi-1.9_64_gcc/bin/mpiexec > GNU gdb (GDB) 7.6.1 > Copyright (C) 2013 Free Software Foundation, Inc. > License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> > This is free software: you are free to change and redistribute it. > There is NO WARRANTY, to the extent permitted by law. Type "show copying" > and "show warranty" for details. > This GDB was configured as "sparc-sun-solaris2.10". > For bug reporting instructions, please see: > <http://www.gnu.org/software/gdb/bugs/>... > Reading symbols from > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/bin/orterun...done. > (gdb) run -np 1 java InitFinalizeMain > Starting program: /usr/local/openmpi-1.9_64_gcc/bin/mpiexec -np 1 java > InitFinalizeMain > [Thread debugging using libthread_db enabled] > [New Thread 1 (LWP 1)] > [New LWP 2 ] > # > # A fatal error has been detected by the Java Runtime Environment: > # > # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=791, tid=2 > # > # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) > # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode > solaris-sparc compressed oops) > # Problematic frame: > # C [libc.so.1+0x3c7f0] strlen+0x50 > # > # Failed to write core dump. Core dumps have been disabled. To enable core > dumping, try "ulimit -c unlimited" before > starting Java again > # > # An error report file with more information is saved as: > # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid791.log > # > # If you would like to submit a bug report, please visit: > # http://bugreport.sun.com/bugreport/crash.jsp > # The crash happened outside the Java Virtual Machine in native code. > # See problematic frame for where to report the bug. > # > -------------------------------------------------------------------------- > mpiexec noticed that process rank 0 with PID 791 on node tyr exited on signal > 6 (Abort). > -------------------------------------------------------------------------- > [LWP 2 exited] > [New Thread 2 ] > [Switching to Thread 1 (LWP 1)] > sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to > satisfy query > (gdb) bt > #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from /usr/lib/sparcv9/ld.so.1 > #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1 > #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1 > #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1 > #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1 > #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1 > #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1 > #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1 > #8 0xffffffff7ec88e98 in vm_close () from > /usr/local/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0 > #9 0xffffffff7ec86478 in lt_dlclose () from > /usr/local/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0 > #10 0xffffffff7ecab5fc in ri_destructor (obj=0x1001fe750) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_component_repository.c:382 > #11 0xffffffff7eca9f38 in opal_obj_run_destructors (object=0x1001fe750) > at ../../../../openmpi-1.9a1r32657/opal/class/opal_object.h:446 > #12 0xffffffff7ecaae9c in mca_base_component_repository_release ( > component=0xffffffff7b122fa8 <mca_oob_tcp_component>) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_component_repository.c:240 > #13 0xffffffff7ecad19c in mca_base_component_unload ( > component=0xffffffff7b122fa8 <mca_oob_tcp_component>, output_id=-1) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:47 > #14 0xffffffff7ecad230 in mca_base_component_close ( > component=0xffffffff7b122fa8 <mca_oob_tcp_component>, output_id=-1) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:60 > #15 0xffffffff7ecad304 in mca_base_components_close (output_id=-1, > components=0xffffffff7f146d88 <orte_oob_base_framework+80>, skip=0x0) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:86 > #16 0xffffffff7ecad26c in mca_base_framework_components_close ( > framework=0xffffffff7f146d38 <orte_oob_base_framework>, skip=0x0) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:66 > #17 0xffffffff7efc671c in orte_oob_base_close () > at ../../../../openmpi-1.9a1r32657/orte/mca/oob/base/oob_base_frame.c:98 > #18 0xffffffff7ecc1b28 in mca_base_framework_close ( > framework=0xffffffff7f146d38 <orte_oob_base_framework>) > at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_framework.c:187 > #19 0xffffffff7be07858 in rte_finalize () > at ../../../../../openmpi-1.9a1r32657/orte/mca/ess/hnp/ess_hnp_module.c:857 > #20 0xffffffff7ef337fc in orte_finalize () > at ../../openmpi-1.9a1r32657/orte/runtime/orte_finalize.c:66 > #21 0x00000001000071e0 in orterun (argc=5, argv=0xffffffff7fffe108) > at ../../../../openmpi-1.9a1r32657/orte/tools/orterun/orterun.c:1099 > #22 0x0000000100003e60 in main (argc=5, argv=0xffffffff7fffe108) > at ../../../../openmpi-1.9a1r32657/orte/tools/orterun/main.c:13 > (gdb) > > > > > > > C problem: > ========== > > tyr small_prog 115 mpiexec -np 1 --host linpc0 init_finalize > [tyr.informatik.hs-fulda.de:00815] mca_oob_tcp_accept: accept() failed: Error > 0 (11). > Hello! > tyr small_prog 116 mpiexec -np 1 --host sunpc0 init_finalize > [tyr.informatik.hs-fulda.de:00819] mca_oob_tcp_accept: accept() failed: Error > 0 (11). > Hello! > tyr small_prog 117 mpiexec -np 1 --host tyr init_finalize > select: Interrupted system call > [tyr:00825] *** Process received signal *** > [tyr:00825] Signal: Bus Error (10) > [tyr:00825] Signal code: Invalid address alignment (1) > [tyr:00825] Failing at address: ffffffff7bd1bfec > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0.0.0:opal_backtrace_print+0x2c > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0.0.0:0xdd1d8 > /lib/sparcv9/libc.so.1:0xd8b98 > /lib/sparcv9/libc.so.1:0xcc70c > /lib/sparcv9/libc.so.1:0xcc918 > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0.0.0:opal_proc_set_name+0x1c > [ Signal 10 (BUS)] > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/openmpi/mca_pmix_native.so:0x103d0 > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/openmpi/mca_ess_pmi.so:0x2fec > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libopen-rte.so.0.0.0:orte_init+0x624 > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libmpi.so.0.0.0:ompi_mpi_init+0x3a8 > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libmpi.so.0.0.0:PMPI_Init+0x2a8 > /home/fd1026/SunOS/sparc/bin/init_finalize:main+0x10 > /home/fd1026/SunOS/sparc/bin/init_finalize:_start+0x7c > [tyr:00825] *** End of error message *** > -------------------------------------------------------------------------- > mpiexec noticed that process rank 0 with PID 825 on node tyr exited on signal > 10 (Bus Error). > -------------------------------------------------------------------------- > tyr small_prog 118 /usr/local/gdb-7.6.1_64_gcc/bin/gdb > /usr/local/openmpi-1.9_64_gcc/bin/mpiexec > GNU gdb (GDB) 7.6.1 > Copyright (C) 2013 Free Software Foundation, Inc. > License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> > This is free software: you are free to change and redistribute it. > There is NO WARRANTY, to the extent permitted by law. Type "show copying" > and "show warranty" for details. > This GDB was configured as "sparc-sun-solaris2.10". > For bug reporting instructions, please see: > <http://www.gnu.org/software/gdb/bugs/>... > Reading symbols from > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/bin/orterun...done. > (gdb) run -np 1 --host tyr init_finalize > Starting program: /usr/local/openmpi-1.9_64_gcc/bin/mpiexec -np 1 --host tyr > init_finalize > [Thread debugging using libthread_db enabled] > [New Thread 1 (LWP 1)] > [New LWP 2 ] > select: Interrupted system call > [tyr:00842] *** Process received signal *** > [tyr:00842] Signal: Bus Error (10) > [tyr:00842] Signal code: Invalid address alignment (1) > [tyr:00842] Failing at address: ffffffff7bd1bfec > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0.0.0:opal_backtrace_print+0x2c > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0.0.0:0xdd1d8 > /lib/sparcv9/libc.so.1:0xd8b98 > /lib/sparcv9/libc.so.1:0xcc70c > /lib/sparcv9/libc.so.1:0xcc918 > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0.0.0:opal_proc_set_name+0x1c > [ Signal 10 (BUS)] > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/openmpi/mca_pmix_native.so:0x103d0 > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/openmpi/mca_ess_pmi.so:0x2fec > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libopen-rte.so.0.0.0:orte_init+0x624 > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libmpi.so.0.0.0:ompi_mpi_init+0x3a8 > /export2/prog/SunOS_sparc/openmpi-1.9_64_gcc/lib64/libmpi.so.0.0.0:PMPI_Init+0x2a8 > /home/fd1026/SunOS/sparc/bin/init_finalize:main+0x10 > /home/fd1026/SunOS/sparc/bin/init_finalize:_start+0x7c > [tyr:00842] *** End of error message *** > -------------------------------------------------------------------------- > mpiexec noticed that process rank 0 with PID 842 on node tyr exited on signal > 10 (Bus Error). > -------------------------------------------------------------------------- > [LWP 2 exited] > [New Thread 2 ] > [Switching to Thread 1 (LWP 1)] > sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to > satisfy query > (gdb) bt > #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from /usr/lib/sparcv9/ld.so.1 > #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1 > #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1 > #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1 > #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1 > #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1 > #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1 > #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1 > #8 0xffffffff7ec88e98 in vm_close () from > /usr/local/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0 > #9 0xffffffff7ec86478 in lt_dlclose () from > /usr/local/openmpi-1.9_64_gcc/lib64/libopen-pal.so.0 > #10 0xffffffff7ecab5fc in ri_destructor (obj=0x1001fe750) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_component_repository.c:382 > #11 0xffffffff7eca9f38 in opal_obj_run_destructors (object=0x1001fe750) > at ../../../../openmpi-1.9a1r32657/opal/class/opal_object.h:446 > #12 0xffffffff7ecaae9c in mca_base_component_repository_release ( > component=0xffffffff7b122fa8 <mca_oob_tcp_component>) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_component_repository.c:240 > #13 0xffffffff7ecad19c in mca_base_component_unload ( > component=0xffffffff7b122fa8 <mca_oob_tcp_component>, output_id=-1) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:47 > #14 0xffffffff7ecad230 in mca_base_component_close ( > component=0xffffffff7b122fa8 <mca_oob_tcp_component>, output_id=-1) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:60 > #15 0xffffffff7ecad304 in mca_base_components_close (output_id=-1, > components=0xffffffff7f146d88 <orte_oob_base_framework+80>, skip=0x0) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:86 > #16 0xffffffff7ecad26c in mca_base_framework_components_close ( > framework=0xffffffff7f146d38 <orte_oob_base_framework>, skip=0x0) > at > ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:66 > #17 0xffffffff7efc671c in orte_oob_base_close () > at ../../../../openmpi-1.9a1r32657/orte/mca/oob/base/oob_base_frame.c:98 > #18 0xffffffff7ecc1b28 in mca_base_framework_close ( > framework=0xffffffff7f146d38 <orte_oob_base_framework>) > at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_framework.c:187 > #19 0xffffffff7be07858 in rte_finalize () > at ../../../../../openmpi-1.9a1r32657/orte/mca/ess/hnp/ess_hnp_module.c:857 > #20 0xffffffff7ef337fc in orte_finalize () > at ../../openmpi-1.9a1r32657/orte/runtime/orte_finalize.c:66 > #21 0x00000001000071e0 in orterun (argc=6, argv=0xffffffff7fffe0f8) > at ../../../../openmpi-1.9a1r32657/orte/tools/orterun/orterun.c:1099 > #22 0x0000000100003e60 in main (argc=6, argv=0xffffffff7fffe0f8) > at ../../../../openmpi-1.9a1r32657/orte/tools/orterun/main.c:13 > (gdb) > > > > I would be grateful, if somebody can fix the problem. Thank you > very much for any help in advance. > > > Kind regards > > Siegmar > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2014/09/25218.php
