Hi, yesterday I installed openmpi-1.9a1r32657 on my machines (Solaris 10 Sparc (tyr), Solaris 10 x86_64 (sunpc0), and openSUSE Linux 12.1 x86_64 (linpc0)) with Sun C 5.12 and gcc-4.9.0.
I have the following problems with my Sun C version. First my problem with Java and below my problem with C. Java problem: ============= tyr java 118 mpijavac InitFinalizeMain.java warning: [path] bad path element "/usr/local/openmpi-1.9_64_cc/lib64/shmem.jar": no such file or directory 1 warning tyr java 119 tyr java 119 mpiexec -np 1 java InitFinalizeMain select: Interrupted system call # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=652, tid=2 # # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode solaris-sparc compressed oops) # Problematic frame: # C [libc.so.1+0x3c7f0] strlen+0x50 # # Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again # # An error report file with more information is saved as: # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid652.log # # If you would like to submit a bug report, please visit: # http://bugreport.sun.com/bugreport/crash.jsp # The crash happened outside the Java Virtual Machine in native code. # See problematic frame for where to report the bug. # -------------------------------------------------------------------------- mpiexec noticed that process rank 0 with PID 652 on node tyr exited on signal 6 (Abort). -------------------------------------------------------------------------- tyr java 120 gdb shows the following backtrace. tyr java 120 /usr/local/gdb-7.6.1_64_gcc/bin/gdb /usr/local/openmpi-1.9_64_cc/bin/mpiexec GNU gdb (GDB) 7.6.1 Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "sparc-sun-solaris2.10". For bug reporting instructions, please see: <http://www.gnu.org/software/gdb/bugs/>... Reading symbols from /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/bin/orterun...done. (gdb) run -np 1 java InitFinalizeMain Starting program: /usr/local/openmpi-1.9_64_cc/bin/mpiexec -np 1 java InitFinalizeMain [Thread debugging using libthread_db enabled] [New Thread 1 (LWP 1)] [New LWP 2 ] # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=672, tid=2 # # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode solaris-sparc compressed oops) # Problematic frame: # C [libc.so.1+0x3c7f0] strlen+0x50 # # Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again # # An error report file with more information is saved as: # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid672.log # # If you would like to submit a bug report, please visit: # http://bugreport.sun.com/bugreport/crash.jsp # The crash happened outside the Java Virtual Machine in native code. # See problematic frame for where to report the bug. # -------------------------------------------------------------------------- mpiexec noticed that process rank 0 with PID 672 on node tyr exited on signal 6 (Abort). -------------------------------------------------------------------------- [LWP 2 exited] [New Thread 2 ] [Switching to Thread 1 (LWP 1)] sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to satisfy query (gdb) bt #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from /usr/lib/sparcv9/ld.so.1 #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1 #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1 #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1 #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1 #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1 #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1 #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1 #8 0xffffffff7e4e6d88 in vm_close () from /usr/local/openmpi-1.9_64_cc/lib64/libopen-pal.so.0 #9 0xffffffff7e4e4074 in lt_dlclose () from /usr/local/openmpi-1.9_64_cc/lib64/libopen-pal.so.0 #10 0xffffffff7e53a1cc in ri_destructor (obj=0x0) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_component_repository.c:382 #11 0xffffffff7e5379a8 in opal_obj_run_destructors (object=0x0) at ../../../../openmpi-1.9a1r32657/opal/class/opal_object.h:446 #12 0xffffffff7e539a3c in mca_base_component_repository_release (component=0xf000) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_component_repository.c:240 #13 0xffffffff7e5400a0 in mca_base_component_unload (component=0x0, output_id=-2145509376) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:47 #14 0xffffffff7e540144 in mca_base_component_close (component=0xffffff7b000030ff, output_id=255) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:60 #15 0xffffffff7e540254 in mca_base_components_close (output_id=767, components=0x0, skip=0xffffff7f73cdf800) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:86 #16 0xffffffff7e540194 in mca_base_framework_components_close (framework=0xff, skip=0xffffff7c801c4000) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:68 #17 0xffffffff7ee45568 in orte_oob_base_close () at ../../../../openmpi-1.9a1r32657/orte/mca/oob/base/oob_base_frame.c:98 #18 0xffffffff7e56bcfc in mca_base_framework_close (framework=0xffffff7e4e3f3cff) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_framework.c:187 #19 0xffffffff7bb13f00 in rte_finalize () at ../../../../../openmpi-1.9a1r32657/orte/mca/ess/hnp/ess_hnp_module.c:857 #20 0xffffffff7ec3ad00 in orte_finalize () at ../../openmpi-1.9a1r32657/orte/runtime/orte_finalize.c:66 #21 0x000000010000e264 in orterun (argc=4607, argv=0x0) at ../../../../openmpi-1.9a1r32657/orte/tools/orterun/orterun.c:1099 #22 0x00000001000046d4 in main (argc=255, argv=0xffffff7f0abf7800) at ../../../../openmpi-1.9a1r32657/orte/tools/orterun/main.c:13 (gdb) C problem: ========== tyr small_prog 111 mpiexec -np 1 --host linpc0 init_finalize [tyr.informatik.hs-fulda.de:00593] mca_oob_tcp_accept: accept() failed: Error 0 (11). Hello! tyr small_prog 112 mpiexec -np 1 --host sunpc0 init_finalize [tyr.informatik.hs-fulda.de:00597] mca_oob_tcp_accept: accept() failed: Error 0 (11). Hello! tyr small_prog 113 mpiexec -np 1 --host tyr init_finalize [tyr:00606] *** Process received signal *** [tyr:00606] Signal: Bus Error (10) [tyr:00606] Signal code: Invalid address alignment (1) [tyr:00606] Failing at address: ffffffff7fffd7fc /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:opal_backtrace_print+0x1c /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:0x1a4960 /lib/sparcv9/libc.so.1:0xd8b98 /lib/sparcv9/libc.so.1:0xcc70c /lib/sparcv9/libc.so.1:0xcc918 /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:opal_dss_unpack_int64+0xf4 [ Signal 2096416616 (?)] /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:opal_dss_unpack_buffer+0x168 /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:opal_dss_unpack+0x24c /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/openmpi/mca_pmix_native.so:0x14e10 /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libmpi.so.0.0.0:ompi_mpi_init+0xd18 /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libmpi.so.0.0.0:MPI_Init+0x26c /home/fd1026/SunOS/sparc/bin/init_finalize:main+0x10 /home/fd1026/SunOS/sparc/bin/init_finalize:_start+0x12c [tyr:00606] *** End of error message *** -------------------------------------------------------------------------- mpiexec noticed that process rank 0 with PID 606 on node tyr exited on signal 10 (Bus Error). -------------------------------------------------------------------------- tyr small_prog 114 gdb shows the following backtrace. tyr small_prog 115 /usr/local/gdb-7.6.1_64_gcc/bin/gdb /usr/local/openmpi-1.9_64_cc/bin/mpiexec GNU gdb (GDB) 7.6.1 Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "sparc-sun-solaris2.10". For bug reporting instructions, please see: <http://www.gnu.org/software/gdb/bugs/>... Reading symbols from /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/bin/orterun...done. (gdb) run -np 1 --host tyr init_finalize Starting program: /usr/local/openmpi-1.9_64_cc/bin/mpiexec -np 1 --host tyr init_finalize [Thread debugging using libthread_db enabled] [New Thread 1 (LWP 1)] [New LWP 2 ] [tyr:00628] *** Process received signal *** [tyr:00628] Signal: Bus Error (10) [tyr:00628] Signal code: Invalid address alignment (1) [tyr:00628] Failing at address: ffffffff7fffd73c /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:opal_backtrace_print+0x1c /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:0x1a4960 /lib/sparcv9/libc.so.1:0xd8b98 /lib/sparcv9/libc.so.1:0xcc70c /lib/sparcv9/libc.so.1:0xcc918 /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:opal_dss_unpack_int64+0xf4 [ Signal 2096416616 (?)] /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:opal_dss_unpack_buffer+0x168 /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libopen-pal.so.0.0.0:opal_dss_unpack+0x24c /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/openmpi/mca_pmix_native.so:0x14e10 /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libmpi.so.0.0.0:ompi_mpi_init+0xd18 /export2/prog/SunOS_sparc/openmpi-1.9_64_cc/lib64/libmpi.so.0.0.0:MPI_Init+0x26c /home/fd1026/SunOS/sparc/bin/init_finalize:main+0x10 /home/fd1026/SunOS/sparc/bin/init_finalize:_start+0x12c [tyr:00628] *** End of error message *** -------------------------------------------------------------------------- mpiexec noticed that process rank 0 with PID 628 on node tyr exited on signal 10 (Bus Error). -------------------------------------------------------------------------- [LWP 2 exited] [New Thread 2 ] [Switching to Thread 1 (LWP 1)] sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to satisfy query (gdb) bt #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from /usr/lib/sparcv9/ld.so.1 #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1 #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1 #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1 #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1 #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1 #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1 #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1 #8 0xffffffff7e4e6d88 in vm_close () from /usr/local/openmpi-1.9_64_cc/lib64/libopen-pal.so.0 #9 0xffffffff7e4e4074 in lt_dlclose () from /usr/local/openmpi-1.9_64_cc/lib64/libopen-pal.so.0 #10 0xffffffff7e53a1cc in ri_destructor (obj=0x0) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_component_repository.c:382 #11 0xffffffff7e5379a8 in opal_obj_run_destructors (object=0x0) at ../../../../openmpi-1.9a1r32657/opal/class/opal_object.h:446 #12 0xffffffff7e539a3c in mca_base_component_repository_release (component=0xf000) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_component_repository.c:240 #13 0xffffffff7e5400a0 in mca_base_component_unload (component=0x0, output_id=-2145509376) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:47 #14 0xffffffff7e540144 in mca_base_component_close (component=0xffffff7b000030ff, output_id=255) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:60 #15 0xffffffff7e540254 in mca_base_components_close (output_id=767, components=0x0, skip=0xffffff7f73cdf800) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:86 #16 0xffffffff7e540194 in mca_base_framework_components_close (framework=0xff, skip=0xffffff7c801c4000) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_components_close.c:68 #17 0xffffffff7ee45568 in orte_oob_base_close () at ../../../../openmpi-1.9a1r32657/orte/mca/oob/base/oob_base_frame.c:98 #18 0xffffffff7e56bcfc in mca_base_framework_close (framework=0xffffff7e4e3f3cff) at ../../../../openmpi-1.9a1r32657/opal/mca/base/mca_base_framework.c:187 #19 0xffffffff7bb13f00 in rte_finalize () at ../../../../../openmpi-1.9a1r32657/orte/mca/ess/hnp/ess_hnp_module.c:857 #20 0xffffffff7ec3ad00 in orte_finalize () at ../../openmpi-1.9a1r32657/orte/runtime/orte_finalize.c:66 #21 0x000000010000e264 in orterun (argc=5631, argv=0x0) at ../../../../openmpi-1.9a1r32657/orte/tools/orterun/orterun.c:1099 #22 0x00000001000046d4 in main (argc=255, argv=0xffffff7f0abf7800) at ../../../../openmpi-1.9a1r32657/orte/tools/orterun/main.c:13 (gdb) I would be grateful, if somebody can fix the problem. Thank you very much for any help in advance. Kind regards Siegmar
