Hi,
> > >>> I have installed openmpi-1.8.2rc2 with gcc-4.9.0 on Solaris
> > >>> 10 Sparc and I receive a bus error, if I run a small program.
I've finally reproduced the bus error in my SPARC environment.
#0 0xffffffff00db4740 (__waitpid_nocancel + 0x44)
(0x200,0x0,0x0,0xa0,0xfffff80100064af0,0x35b4)
#1 0xffffffff0001a310 (handle_signal + 0x574) (signo=10,info=(struct siginfo *)
0x000007feffffd100,p=(void *) 0x000007feffffd100) at line 277 in ../sigattach.c
<SIGNAL HANDLER>
#2 0xffffffff0282aff4 (store + 0x540) (uid=(unsigned long *)
0xffffffff0118a128,scope=8:'\b',key=(char *) 0xffffffff0106a0a8
"opal.local.ldr",data=(void *) 0x000007feffffde74,type=15:'\017') at line 252
in db_hash.c
#3 0xffffffff01266350 (opal_db_base_store + 0xc4) (proc=(unsigned long *)
0xffffffff0118a128,scope=8:'\b',key=(char *) 0xffffffff0106a0a8
"opal.local.ldr",object=(void *) 0x000007feffffde74,type=15:'\017') at line 49
in db_base_fns.c
#4 0xffffffff00fdbab4 (orte_util_decode_pidmap + 0x790) (bo=(struct *)
0x0000000000281d70) at line 975 in nidmap.c
#5 0xffffffff00fd6d20 (orte_util_nidmap_init + 0x3dc) (buffer=(struct
opal_buffer_t *) 0x0000000000241fc0) at line 141 in nidmap.c
#6 0xffffffff01e298cc (rte_init + 0x2a0) () at line 153 in ess_env_module.c
#7 0xffffffff00f9f28c (orte_init + 0x308) (pargc=(int *)
0x0000000000000000,pargv=(char ***) 0x0000000000000000,flags=32) at line 148 in
orte_init.c
#8 0xffffffff001a6f08 (ompi_mpi_init + 0x31c) (argc=1,argv=(char **)
0x000007fefffff348,requested=0,provided=(int *) 0x000007feffffe698) at line 464
in ompi_mpi_init.c
#9 0xffffffff001ff79c (MPI_Init + 0x2b0) (argc=(int *)
0x000007feffffe814,argv=(char ***) 0x000007feffffe818) at line 84 in init.c
#10 0x0000000000100ae4 (main + 0x44) (argc=1,argv=(char **) 0x000007fefffff348)
at line 8 in mpiinitfinalize.c
#11 0xffffffff00d2b81c (__libc_start_main + 0x194)
(0x100aa0,0x1,0x7fefffff348,0x100d24,0x100d14,0x0)
#12 0x000000000010094c (_start + 0x2c) ()
The line 252 in opal/mca/db/hash/db_hash.c is:
case OPAL_UINT64:
if (NULL == data) {
OPAL_ERROR_LOG(OPAL_ERR_BAD_PARAM);
return OPAL_ERR_BAD_PARAM;
}
kv->type = OPAL_UINT64;
kv->data.uint64 = *(uint64_t*)(data); // !!! here !!!
break;
My environment is:
Open MPI v1.8 branch r32447 (latest)
configure --enable-debug
SPARC-V9 (Fujitsu SPARC64 IXfx)
Linux (custom)
gcc 4.2.4
I could not reproduce it with Open MPI trunk nor with Fujitsu compiler.
Can this information help?
Takahiro Kawashima,
MPI development team,
Fujitsu
> Hi,
>
> I'm sorry once more to answer late, but the last two days our mail
> server was down (hardware error).
>
> > Did you configure this --enable-debug?
>
> Yes, I used the following command.
>
> ../openmpi-1.8.2rc3/configure --prefix=/usr/local/openmpi-1.8.2_64_gcc \
> --libdir=/usr/local/openmpi-1.8.2_64_gcc/lib64 \
> --with-jdk-bindir=/usr/local/jdk1.8.0/bin \
> --with-jdk-headers=/usr/local/jdk1.8.0/include \
> JAVA_HOME=/usr/local/jdk1.8.0 \
> LDFLAGS="-m64 -L/usr/local/gcc-4.9.0/lib/amd64" \
> CC="gcc" CXX="g++" FC="gfortran" \
> CFLAGS="-m64" CXXFLAGS="-m64" FCFLAGS="-m64" \
> CPP="cpp" CXXCPP="cpp" \
> CPPFLAGS="" CXXCPPFLAGS="" \
> --enable-mpi-cxx \
> --enable-cxx-exceptions \
> --enable-mpi-java \
> --enable-heterogeneous \
> --enable-mpi-thread-multiple \
> --with-threads=posix \
> --with-hwloc=internal \
> --without-verbs \
> --with-wrapper-cflags="-std=c11 -m64" \
> --enable-debug \
> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
>
>
>
> > If so, you should get a line number in the backtrace
>
> I got them for gdb (see below), but not for "dbx".
>
>
> Kind regards
>
> Siegmar
>
>
>
> >
> >
> > On Aug 5, 2014, at 2:59 AM, Siegmar Gross
> <siegmar.gr...@informatik.hs-fulda.de> wrote:
> >
> > > Hi,
> > >
> > > I'm sorry to answer so late, but last week I didn't have Internet
> > > access. In the meantime I've installed openmpi-1.8.2rc3 and I get
> > > the same error.
> > >
> > >> This looks like the typical type of alignment error that we used
> > >> to see when testing regularly on SPARC. :-\
> > >>
> > >> It looks like the error was happening in mca_db_hash.so. Could
> > >> you get a stack trace / file+line number where it was failing
> > >> in mca_db_hash? (i.e., the actual bad code will likely be under
> > >> opal/mca/db/hash somewhere)
> > >
> > > Unfortunately I don't get a file+line number from a file in
> > > opal/mca/db/Hash.
> > >
> > >
> > >
> > > tyr small_prog 102 ompi_info | grep MPI:
> > > Open MPI: 1.8.2rc3
> > > tyr small_prog 103 which mpicc
> > > /usr/local/openmpi-1.8.2_64_gcc/bin/mpicc
> > > tyr small_prog 104 mpicc init_finalize.c
> > > tyr small_prog 106 /opt/solstudio12.3/bin/sparcv9/dbx
> /usr/local/openmpi-1.8.2_64_gcc/bin/mpiexec
> > > For information about new features see `help changes'
> > > To remove this message, put `dbxenv suppress_startup_message 7.9' in your
> .dbxrc
> > > Reading mpiexec
> > > Reading ld.so.1
> > > Reading libopen-rte.so.7.0.4
> > > Reading libopen-pal.so.6.2.0
> > > Reading libsendfile.so.1
> > > Reading libpicl.so.1
> > > Reading libkstat.so.1
> > > Reading liblgrp.so.1
> > > Reading libsocket.so.1
> > > Reading libnsl.so.1
> > > Reading libgcc_s.so.1
> > > Reading librt.so.1
> > > Reading libm.so.2
> > > Reading libpthread.so.1
> > > Reading libc.so.1
> > > Reading libdoor.so.1
> > > Reading libaio.so.1
> > > Reading libmd.so.1
> > > (dbx) check -all
> > > access checking - ON
> > > memuse checking - ON
> > > (dbx) run -np 1 a.outRunning: mpiexec -np 1 a.out
> > > (process id 27833)
> > > Reading rtcapihook.so
> > > Reading libdl.so.1
> > > Reading rtcaudit.so
> > > Reading libmapmalloc.so.1
> > > Reading libgen.so.1
> > > Reading libc_psr.so.1
> > > Reading rtcboot.so
> > > Reading librtc.so
> > > Reading libmd_psr.so.1
> > > RTC: Enabling Error Checking...
> > > RTC: Running program...
> > > Write to unallocated (wua) on thread 1:
> > > Attempting to write 1 byte at address 0xffffffff79f04000
> > > t@1 (l@1) stopped in _readdir at 0xffffffff55174da0
> > > 0xffffffff55174da0: _readdir+0x0064: call
> _PROCEDURE_LINKAGE_TABLE_+0x2380 [PLT] ! 0xffffffff55342a80
> > > (dbx) where
> > > current thread: t@1
> > > =>[1] _readdir(0xffffffff79f00300, 0x2e6800, 0x4, 0x2d, 0x4,
> 0xffffffff79f00300), at 0xffffffff55174da0
> > > [2] list_files_by_dir(0x100138fd8, 0xffffffff7fffd1f0,
> > > 0xffffffff7fffd1e8,
> 0xffffffff7fffd210, 0x0, 0xffffffff702a0010), at
> > > 0xffffffff63174594
> > > [3] foreachfile_callback(0x100138fd8, 0xffffffff7fffd458, 0x0, 0x2e,
> > > 0x0,
> 0xffffffff702a0010), at 0xffffffff6317461c
> > > [4] foreach_dirinpath(0x1001d8a28, 0x0, 0xffffffff631745e0,
> 0xffffffff7fffd458, 0x0, 0xffffffff702a0010), at 0xffffffff63171684
> > > [5] lt_dlforeachfile(0x1001d8a28, 0xffffffff6319656c, 0x0, 0x53, 0x2f,
> 0xf), at 0xffffffff63174748
> > > [6] find_dyn_components(0x0, 0xffffffff6323b570, 0x0, 0x1,
> 0xffffffff7fffd6a0, 0xffffffff702a0010), at 0xffffffff63195e38
> > > [7] mca_base_component_find(0x0, 0xffffffff6323b570, 0xffffffff6335e1b0,
> 0x0, 0xffffffff7fffd6a0, 0x1), at 0xffffffff631954d8
> > > [8] mca_base_framework_components_register(0xffffffff6335e1c0, 0x0,
> > > 0x3e,
> 0x0, 0x3b, 0x100800), at 0xffffffff631b1638
> > > [9] mca_base_framework_register(0xffffffff6335e1c0, 0x0, 0x2,
> 0xffffffff7fffd8d0, 0x0, 0xffffffff702a0010), at 0xffffffff631b24d4
> > > [10] mca_base_framework_open(0xffffffff6335e1c0, 0x0, 0x2,
> 0xffffffff7fffd990, 0x0, 0xffffffff702a0010), at 0xffffffff631b25d0
> > > [11] opal_init(0xffffffff7fffdd70, 0xffffffff7fffdd78, 0x100117c60,
> 0xffffffff7fffde58, 0x400, 0x100117c60), at
> > > 0xffffffff63153694
> > > [12] orterun(0x4, 0xffffffff7fffde58, 0x2, 0xffffffff7fffdda0, 0x0,
> 0xffffffff702a0010), at 0x100005078
> > > [13] main(0x4, 0xffffffff7fffde58, 0xffffffff7fffde80, 0x100117c60,
> 0x100000000, 0xffffffff6a700200), at 0x100003d68
> > > (dbx)
> > >
> > >
> > >
> > > I get the following output with gdb.
> > >
> > > tyr small_prog 107 /usr/local/gdb-7.6.1_64_gcc/bin/gdb
> /usr/local/openmpi-1.8.2_64_gcc/bin/mpiexec
> > > GNU gdb (GDB) 7.6.1
> > > Copyright (C) 2013 Free Software Foundation, Inc.
> > > License GPLv3+: GNU GPL version 3 or later
> <http://gnu.org/licenses/gpl.html>
> > > This is free software: you are free to change and redistribute it.
> > > There is NO WARRANTY, to the extent permitted by law. Type "show copying"
> > > and "show warranty" for details.
> > > This GDB was configured as "sparc-sun-solaris2.10".
> > > For bug reporting instructions, please see:
> > > <http://www.gnu.org/software/gdb/bugs/>...
> > > Reading symbols from
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/bin/orterun...done.
> > > (gdb) run -np 1 a.out
> > > Starting program: /usr/local/openmpi-1.8.2_64_gcc/bin/mpiexec -np 1 a.out
> > > [Thread debugging using libthread_db enabled]
> > > [New Thread 1 (LWP 1)]
> > > [New LWP 2 ]
> > > [tyr:27867] *** Process received signal ***
> > > [tyr:27867] Signal: Bus Error (10)
> > > [tyr:27867] Signal code: Invalid address alignment (1)
> > > [tyr:27867] Failing at address: ffffffff7fffd224
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6.2.0:opal_b
> acktrace_print+0x2c
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6.2.0:0xccfa
> 0
> > > /lib/sparcv9/libc.so.1:0xd8b98
> > > /lib/sparcv9/libc.so.1:0xcc70c
> > > /lib/sparcv9/libc.so.1:0xcc918
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/openmpi/mca_db_hash.so:0x3e
> e8 [ Signal 10 (BUS)]
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6.2.0:opal_d
> b_base_store+0xc8
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-rte.so.7.0.4:orte_u
> til_decode_pidmap+0x798
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-rte.so.7.0.4:orte_u
> til_nidmap_init+0x3cc
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/openmpi/mca_ess_env.so:0x22
> 6c
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-rte.so.7.0.4:orte_i
> nit+0x308
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libmpi.so.1.5.2:ompi_mpi_in
> it+0x31c
> > >
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libmpi.so.1.5.2:PMPI_Init+0
> x2a8
> > >
> /home/fd1026/work/skripte/master/parallel/prog/mpi/small_prog/a.out:main+0x20
> > >
> /home/fd1026/work/skripte/master/parallel/prog/mpi/small_prog/a.out:_start+0x7c
> > > [tyr:27867] *** End of error message ***
> > > --------------------------------------------------------------------------
> > > mpiexec noticed that process rank 0 with PID 27867 on node tyr exited on
> signal 10 (Bus Error).
> > > --------------------------------------------------------------------------
> > > [LWP 2 exited]
> > > [New Thread 2 ]
> > > [Switching to Thread 1 (LWP 1)]
> > > sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to
> satisfy query
> > > (gdb) bt
> > > #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from
> /usr/lib/sparcv9/ld.so.1
> > > #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1
> > > #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1
> > > #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1
> > > #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1
> > > #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1
> > > #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1
> > > #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1
> > > #8 0xffffffff7ec7746c in vm_close ()
> > > from /usr/local/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6
> > > #9 0xffffffff7ec74a4c in lt_dlclose ()
> > > from /usr/local/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6
> > > #10 0xffffffff7ec99b70 in ri_destructor (obj=0x1001ead30)
> > > at
> ../../../../openmpi-1.8.2rc3/opal/mca/base/mca_base_component_repository.c:391
> > > #11 0xffffffff7ec98488 in opal_obj_run_destructors (object=0x1001ead30)
> > > at ../../../../openmpi-1.8.2rc3/opal/class/opal_object.h:446
> > > #12 0xffffffff7ec993ec in mca_base_component_repository_release (
> > > component=0xffffffff7b023cf0 <mca_oob_tcp_component>)
> > > at
> ../../../../openmpi-1.8.2rc3/opal/mca/base/mca_base_component_repository.c:244
> > > #13 0xffffffff7ec9b734 in mca_base_component_unload (
> > > component=0xffffffff7b023cf0 <mca_oob_tcp_component>, output_id=-1)
> > > at
> ../../../../openmpi-1.8.2rc3/opal/mca/base/mca_base_components_close.c:47
> > > #14 0xffffffff7ec9b7c8 in mca_base_component_close (
> > > component=0xffffffff7b023cf0 <mca_oob_tcp_component>, output_id=-1)
> > > at
> ../../../../openmpi-1.8.2rc3/opal/mca/base/mca_base_components_close.c:60
> > > #15 0xffffffff7ec9b89c in mca_base_components_close (output_id=-1,
> > > components=0xffffffff7f12b430 <orte_oob_base_framework+80>, skip=0x0)
> > > ---Type <return> to continue, or q <return> to quit---
> > > at
> ../../../../openmpi-1.8.2rc3/opal/mca/base/mca_base_components_close.c:86
> > > #16 0xffffffff7ec9b804 in mca_base_framework_components_close (
> > > framework=0xffffffff7f12b3e0 <orte_oob_base_framework>, skip=0x0)
> > > at
> ../../../../openmpi-1.8.2rc3/opal/mca/base/mca_base_components_close.c:66
> > > #17 0xffffffff7efae1e4 in orte_oob_base_close ()
> > > at ../../../../openmpi-1.8.2rc3/orte/mca/oob/base/oob_base_frame.c:94
> > > #18 0xffffffff7ecb28ac in mca_base_framework_close (
> > > framework=0xffffffff7f12b3e0 <orte_oob_base_framework>)
> > > at ../../../../openmpi-1.8.2rc3/opal/mca/base/mca_base_framework.c:187
> > > #19 0xffffffff7bf078c0 in rte_finalize ()
> > > at
> > > ../../../../../openmpi-1.8.2rc3/orte/mca/ess/hnp/ess_hnp_module.c:858
> > > #20 0xffffffff7ef30a44 in orte_finalize ()
> > > at ../../openmpi-1.8.2rc3/orte/runtime/orte_finalize.c:65
> > > #21 0x00000001000070c4 in orterun (argc=4, argv=0xffffffff7fffe0e8)
> > > at ../../../../openmpi-1.8.2rc3/orte/tools/orterun/orterun.c:1096
> > > #22 0x0000000100003d70 in main (argc=4, argv=0xffffffff7fffe0e8)
> > > at ../../../../openmpi-1.8.2rc3/orte/tools/orterun/main.c:13
> > > (gdb)
> > >
> > >
> > > Is the above information helpful to track down the error? Do you need
> > > anything else? Thank you very much for any help in advance.
> > >
> > >
> > > Kind regards
> > >
> > > Siegmar
> > >
> > >
> > >
> > >
> > >> On Jul 25, 2014, at 2:08 AM, Siegmar Gross
> <siegmar.gr...@informatik.hs-fulda.de> wrote:
> > >>
> > >>> Hi,
> > >>>
> > >>> I have installed openmpi-1.8.2rc2 with gcc-4.9.0 on Solaris
> > >>> 10 Sparc and I receive a bus error, if I run a small program.
> > >>>
> > >>> tyr hello_1 105 mpiexec -np 2 a.out
> > >>> [tyr:29164] *** Process received signal ***
> > >>> [tyr:29164] Signal: Bus Error (10)
> > >>> [tyr:29164] Signal code: Invalid address alignment (1)
> > >>> [tyr:29164] Failing at address: ffffffff7fffd1c4
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6.2.0:opal_b
> acktrace_print+0x2c
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6.2.0:0xccfd
> 0
> > >>> /lib/sparcv9/libc.so.1:0xd8b98
> > >>> /lib/sparcv9/libc.so.1:0xcc70c
> > >>> /lib/sparcv9/libc.so.1:0xcc918
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/openmpi/mca_db_hash.so:0x3e
> e8 [ Signal 10 (BUS)]
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-pal.so.6.2.0:opal_d
> b_base_store+0xc8
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-rte.so.7.0.4:orte_u
> til_decode_pidmap+0x798
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-rte.so.7.0.4:orte_u
> til_nidmap_init+0x3cc
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/openmpi/mca_ess_env.so:0x22
> 6c
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libopen-rte.so.7.0.4:orte_i
> nit+0x308
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libmpi.so.1.5.2:ompi_mpi_in
> it+0x31c
> > >>>
> /export2/prog/SunOS_sparc/openmpi-1.8.2_64_gcc/lib64/libmpi.so.1.5.2:PMPI_Init+0
> x2a8
> > >>> /home/fd1026/work/skripte/master/parallel/prog/mpi/hello_1/a.out:main+0x20
> > >>>
> /home/fd1026/work/skripte/master/parallel/prog/mpi/hello_1/a.out:_start+0x7c
> > >>> [tyr:29164] *** End of error message ***
> > >>> ...
> > >>>
> > >>>
> > >>> I get the following output if I run the program in "dbx".
> > >>>
> > >>> ...
> > >>> RTC: Enabling Error Checking...
> > >>> RTC: Running program...
> > >>> Write to unallocated (wua) on thread 1:
> > >>> Attempting to write 1 byte at address 0xffffffff79f04000
> > >>> t@1 (l@1) stopped in _readdir at 0xffffffff55174da0
> > >>> 0xffffffff55174da0: _readdir+0x0064: call
> _PROCEDURE_LINKAGE_TABLE_+0x2380 [PLT] ! 0xffffffff55342a80
> > >>> (dbx)
> > >>>
> > >>>
> > >>> Hopefully the above output helps to fix the error. Can I provide
> > >>> anything else? Thank you very much for any help in advance.
> > >>>
> > >>>
> > >>> Kind regards
> > >>>
> > >>> Siegmar
