I'm trying to update to openMPI 1.8.1 thru ssh and Myrinet
running a command as
/opt/openmpi/bin/mpirun --verbose --mca mtl mx --mca pml cm -hostfile
hostfile -np 16
when the hostfile contain only two nodes as
host1 slots=8 max-slots=8
host2 slots=8 max-slots=8
it runs perfectly but when the hostfile has a third node as
host1 slots=8 max-slots=8
host2 slots=8 max-slots=8
host3 slots=8 max-slots=8
it try to establish an ssh connection between the running hosts1 and host3
that should not run any process that fails hanging the process without
signaling.
my ompi_info is as follow
Package: Open MPI XXX Distribution
Open MPI: 1.8.1
Open MPI repo revision: r31483
Open MPI release date: Apr 22, 2014
Open RTE: 1.8.1
Open RTE repo revision: r31483
Open RTE release date: Apr 22, 2014
OPAL: 1.8.1
OPAL repo revision: r31483
OPAL release date: Apr 22, 2014
MPI API: 3.0
Ident string: 1.8.1
Prefix: /opt/openmpi
Configured architecture: x86_64-apple-darwin9.8.0
Configure host: XXXX
Configured by: XXXX
Configured on: Thu Jun 12 10:37:33 CEST 2014
Configure host: XXXX
Built by: XXXX
Built on: Thu Jun 12 11:13:16 CEST 2014
Built host: XXXX
C bindings: yes
C++ bindings: yes
Fort mpif.h: yes (single underscore)
Fort use mpi: yes (full: ignore TKR)
Fort use mpi size: deprecated-ompi-info-value
Fort use mpi_f08: yes
Fort mpi_f08 compliance: The mpi_f08 module is available, but due to
limitations in the ifort compiler, does not
support
the following: array subsections, direct passthru
(where possible) to underlying Open MPI's C
functionality
Fort mpi_f08 subarrays: no
Java bindings: no
Wrapper compiler rpath: unnecessary
C compiler: icc
C compiler absolute: /opt/intel/Compiler/11.1/080/bin/intel64/icc
C compiler family name: INTEL
C compiler version: 1110.20091130
C++ compiler: icpc
C++ compiler absolute: /opt/intel/Compiler/11.1/080/bin/intel64/icpc
Fort compiler: ifort
Fort compiler abs: /opt/intel/Compiler/11.1/080/bin/intel64/ifort
Fort ignore TKR: yes (!DEC$ ATTRIBUTES NO_ARG_CHECK ::)
Fort 08 assumed shape: no
Fort optional args: yes
Fort BIND(C) (all): yes
Fort ISO_C_BINDING: yes
Fort SUBROUTINE BIND(C): yes
Fort TYPE,BIND(C): yes
Fort T,BIND(C,name="a"): yes
Fort PRIVATE: yes
Fort PROTECTED: yes
Fort ABSTRACT: yes
Fort ASYNCHRONOUS: yes
Fort PROCEDURE: yes
Fort f08 using wrappers: yes
C profiling: yes
C++ profiling: yes
Fort mpif.h profiling: yes
Fort use mpi profiling: yes
Fort use mpi_f08 prof: yes
C++ exceptions: no
Thread support: posix (MPI_THREAD_MULTIPLE: no, OPAL support: yes,
OMPI progress: no, ORTE progress: yes, Event lib:
yes)
Sparse Groups: no
Internal debug support: no
MPI interface warnings: yes
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
libltdl support: yes
Heterogeneous support: no
mpirun default --prefix: no
MPI I/O support: yes
MPI_WTIME support: gettimeofday
Symbol vis. support: yes
Host topology support: yes
MPI extensions:
FT Checkpoint support: no (checkpoint thread: no)
C/R Enabled Debugging: no
VampirTrace support: yes
MPI_MAX_PROCESSOR_NAME: 256
MPI_MAX_ERROR_STRING: 256
MPI_MAX_OBJECT_NAME: 64
MPI_MAX_INFO_KEY: 36
MPI_MAX_INFO_VAL: 256
MPI_MAX_PORT_NAME: 1024
MPI_MAX_DATAREP_STRING: 128
