On 5/7/13 9:07 PM, Ralph Castain wrote: > Is there a typo here? > > /opt/apps/abinit/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl/usr/local/lib:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib:/usr/local/lib:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64 > > I don't see a colon after the initial /opt/apps path - looks like it is > missing
I dont have any lib installed at /opt/apps. All libs with full appropriate paths will be loaded once the module is called. D. > > > On May 7, 2013, at 7:01 AM, Duke Nguyen <duke.li...@gmx.com> wrote: > >> On 5/7/13 7:02 PM, Reuti wrote: >>> Hi, >>> >>> Am 07.05.2013 um 13:36 schrieb Duke Nguyen: >>> >>>> I am testing our cluster with module environment, and am having a >>>> headache to understand openmpi 1.7.2!!! So our system currently has >>>> openmpi 1.6.3 (at default location /usr/local), 1.6.4 and 1.7.2 compiled >>>> with intel compilers (installed at /opt/apps). In order to use openmpi >>>> 1.7.2 for example, I tried: >>>> >>>> $ module load mpi/openmpi-1.7.2_composer_xe_2013.3.163 >>>> $ module load >>>> apps/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl >>>> $ mpirun ./mpihello_intel >>> >>> What does: >>> >>> $ which mpirun >> >> >> $ which mpirun >> /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/bin/mpirun >> >>> >>> show? Did you also recompile your application? >> >> >> Yes, I did. That is why abinit has that long's name when I call it using >> module >> (abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl -> >> abinit compiled with intel xe 2013.3.163 and openmpi 1.7.2 and >> fftw3-mkl; also openmpi 1.7.2 was compiled with intel xe 2013.3.163). >> >>> >>> -- Reuti >>> >>> >>>> mca: base: component_find: unable to open >>>> /usr/local/lib/openmpi/mca_ess_hnp: >>>> /usr/local/lib/openmpi/mca_ess_hnp.so: undefined symbol: >>>> orte_local_jobdata (ignored) >>>> mca: base: component_find: unable to open >>>> /usr/local/lib/openmpi/mca_ess_slurm: >>>> /usr/local/lib/openmpi/mca_ess_slurm.so: undefined symbol: >>>> orte_orted_exit_with_barrier (ignored) >>>> mca: base: component_find: unable to open >>>> /usr/local/lib/openmpi/mca_ess_slurmd: >>>> /usr/local/lib/openmpi/mca_ess_slurmd.so: undefined symbol: >>>> orte_pmap_t_class (ignored) >>>> mpirun: symbol lookup error: >>>> /usr/local/lib/openmpi/mca_ess_singleton.so: undefined symbol: >>>> orte_util_setup_local_nidmap_entries >>>> >>>> To investigate the error, I tried: >>>> >>>> $ echo $LD_LIBRARY_PATH >>>> /opt/apps/abinit/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl/usr/local/lib:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib:/usr/local/lib:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64 >>>> $ ls >>>> /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi >>>> | grep mca_ess >>>> mca_ess_env.la >>>> mca_ess_env.so >>>> mca_ess_hnp.la >>>> mca_ess_hnp.so >>>> mca_ess_singleton.la >>>> mca_ess_singleton.so >>>> mca_ess_slurm.la >>>> mca_ess_slurm.so >>>> mca_ess_tm.la >>>> mca_ess_tm.so >>>> mca_ess_tool.la >>>> mca_ess_tool.so >>>> >>>> So apparently openmpi 1.7.2 looks for the old library at >>>> /usr/loca/lib/openmpi for 1.6.3 instead of at >>>> /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi. >>>> Is there away to force openmpi 1.7.2 look at >>>> /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi >>>> first before looking at other locations? >>>> >>>> Thanks, >>>> >>>> D. >>>> >>>> >>>> _______________________________________________ >>>> users mailing list >>>> us...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >>> >>> _______________________________________________ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users >
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