My gcc 4.7.2 build appears to be ignoring the one in /usr/lib64 and using the one in its own install tree: /usr/projects/hpcsoft/moonlight/gcc/4.7.2/lib64/libgfortran.so.3
-david -- David Gunter HPC-3: Infrastructure Team Los Alamos National Laboratory On Dec 6, 2012, at 2:50 PM, Paul Hatton wrote: > Ahh, it's looking in /usr/lib64 and finding libgfortran.so.3 which is older > than the one expected by gcc 4.7 (system gcc is 4.4.6). Looking at my gcc > installation I don't have any shared libraries in there, just static ones. > > David - if you don't mind a slight diversion, where is your libgfortran.so.3? > Does your system have one in /usr/lib64 (assuming you're on a 64-bit system) > or in /usr/projects/hpcsoft/moonlight/gcc/4.7.2/somewhere? > > I'll have a play with my setup as well. Should have spotted this myself. > > Thanks for your help > > -- > Paul Hatton > High Performance Computing and Visualisation Specialist > IT Services, The University of Birmingham > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > [Service Manager, Birmingham Environment for Academic Research] > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > >> -----Original Message----- >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On >> Behalf Of Jeff Squyres >> Sent: 06 December 2012 21:30 >> To: Open MPI Users >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >> 4.7.2 >> >> It looks like your gfortran compiler is broken...? >> >> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND >> (selected_int_kind(9)) >> configure:53507: gfortran -o conftest conftestf.f90 >> configure:53514: $? = 0 >> configure:53554: ./conftest >> ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not >> found (required by ./conftest) >> configure:53561: $? = 1 >> >> >> >> On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote: >> >>> failed one attached. >>> >>> -- >>> Paul Hatton >>> High Performance Computing and Visualisation Specialist >>> IT Services, The University of Birmingham >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>> [Service Manager, Birmingham Environment for Academic Research] >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] >>> >>> >>>> -----Original Message----- >>>> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] >> On >>>> Behalf Of Jeff Squyres >>>> Sent: 06 December 2012 21:17 >>>> To: Open MPI Users >>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >>>> 4.7.2 >>>> >>>> This does not appear to be the right config.log -- the test in >> question >>>> passed: >>>> >>>> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND >>>> (selected_int_kind(9)) >>>> configure:53507: gfortran -o conftest conftestf.f90 >>>> configure:53514: $? = 0 >>>> >>>> >>>> >>>> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: >>>> >>>>> Thanks. zip-ed config.log attached >>>>> >>>>> -- >>>>> Paul Hatton >>>>> High Performance Computing and Visualisation Specialist >>>>> IT Services, The University of Birmingham >>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>>>> [Service Manager, Birmingham Environment for Academic Research] >>>>> [Also Technical Director, IBM Visual and Spatial Technology Centre] >>>>> >>>>> >>>>>> -----Original Message----- >>>>>> From: users-boun...@open-mpi.org [mailto:users-bounces@open- >> mpi.org] >>>> On >>>>>> Behalf Of Jeff Squyres >>>>>> Sent: 06 December 2012 20:54 >>>>>> To: Open MPI Users >>>>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >>>>>> 4.7.2 >>>>>> >>>>>> I have not tested with gfortran 4.7.2. >>>>>> >>>>>> Can you send the config.log file? (please compress) >>>>>> >>>>>> >>>>>> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: >>>>>> >>>>>>> I've searched the FAQ but not come up with anything about this >> ... >>>>>> with OpenMPI 1.6.3 and gcc 4.7.2, when I >>>>>>> >>>>>>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ >>>>>>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ >>>>>>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ >>>>>>> --with-openib \ >>>>>>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log >>>>>>> >>>>>>> configure fails with >>>>>>> >>>>>>> checking Fortran 90 kind of MPI_INTEGER_KIND >>>>>> (selected_int_kind(9))... >>>>>>> configure: error: Could not determine kind of >>>>>> selected_int_kind(MPI_INTEGER_KIND) >>>>>>> >>>>>>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel >>>>>> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is >>>>>> 4.4.6 >>>>>>> >>>>>>> I've attached the output from the configure command. >>>>>>> >>>>>>> Thanks >>>>>>> >>>>>>> -- >>>>>>> Paul Hatton >>>>>>> High Performance Computing and Visualisation Specialist >>>>>>> IT Services, The University of Birmingham >>>>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>>>>>> [Service Manager, Birmingham Environment for Academic Research] >>>>>>> [Also Technical Director, IBM Visual and Spatial Technology >> Centre] >>>>>>> >>>>>>> <configure- >>>>>> >> 12_12_06_19h48m.log>_______________________________________________ >>>>>>> users mailing list >>>>>>> us...@open-mpi.org >>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>> >>>>>> >>>>>> -- >>>>>> Jeff Squyres >>>>>> jsquy...@cisco.com >>>>>> For corporate legal information go to: >>>>>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> users mailing list >>>>>> us...@open-mpi.org >>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>> >>>>> >>>>> >>>> >> *********************************************************************** >>>> ****** >>>>> ** >>>> ** >>>>> ** WARNING: This email contains an attachment of a very suspicious >>>> type. ** >>>>> ** You are urged NOT to open this attachment unless you are >>>> absolutely ** >>>>> ** sure it is legitimate. Opening this attachment may cause >>>> irreparable ** >>>>> ** damage to your computer and your files. If you have any >> questions >>>> ** >>>>> ** about the validity of this message, PLEASE SEEK HELP BEFORE >>>> OPENING IT. ** >>>>> ** >>>> ** >>>>> ** This warning was added by the IU Computer Science Dept. mail >>>> scanner. ** >>>>> >>>> >> *********************************************************************** >>>> ****** >>>>> >>>>> >>>>> <config.zip>_______________________________________________ >>>>> users mailing list >>>>> us...@open-mpi.org >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>> >>>> >>>> -- >>>> Jeff Squyres >>>> jsquy...@cisco.com >>>> For corporate legal information go to: >>>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>>> >>>> >>>> _______________________________________________ >>>> users mailing list >>>> us...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >>> >>> >> *********************************************************************** >> ****** >>> ** >> ** >>> ** WARNING: This email contains an attachment of a very suspicious >> type. ** >>> ** You are urged NOT to open this attachment unless you are >> absolutely ** >>> ** sure it is legitimate. Opening this attachment may cause >> irreparable ** >>> ** damage to your computer and your files. If you have any questions >> ** >>> ** about the validity of this message, PLEASE SEEK HELP BEFORE >> OPENING IT. ** >>> ** >> ** >>> ** This warning was added by the IU Computer Science Dept. mail >> scanner. ** >>> >> *********************************************************************** >> ****** >>> >>> >>> <config.zip>_______________________________________________ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> -- >> Jeff Squyres >> jsquy...@cisco.com >> For corporate legal information go to: >> http://www.cisco.com/web/about/doing_business/legal/cri/ >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
