Hello again,
I need own static "mpirun" for porting (together with the static executable)
onto various (unknown) grid servers. In grid computing one can not expect
OpenMPI-ILP64 installtion on each computing element.
Jeff: I tried LDFLAGS in configure
ilias@194.160.135.47:~/bin/ompi-ilp64_full_static/openmpi-1.4.4/../configure
--prefix=/home/ilias/bin/ompi-ilp64_full_static -without-memory-manager
--without-libnuma --enable-static --disable-shared CXX=g++ CC=gcc F77=gfortran
FC=gfortran FFLAGS="-m64 -fdefault-integer-8 -static" FCFLAGS="-m64
-fdefault-integer-8 -static" CFLAGS="-m64 -static" CXXFLAGS="-m64 -static"
LDFLAGS="-static -Wl,-E"
but still got dynamic, not static "mpirun":
ilias@194.160.135.47:~/bin/ompi-ilp64_full_static/bin/.ldd ./mpirun
linux-vdso.so.1 => (0x00007fff6090c000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fd7277cf000)
libnsl.so.1 => /lib/x86_64-linux-gnu/libnsl.so.1 (0x00007fd7275b7000)
libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1 (0x00007fd7273b3000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fd727131000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
(0x00007fd726f15000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fd726b90000)
/lib64/ld-linux-x86-64.so.2 (0x00007fd7279ef000)
Any help please ? config.log is here:
https://docs.google.com/open?id=0B8qBHKNhZAipNTNkMzUxZDEtNjJmZi00YzY3LWI4MmYtY2RkZDVkMjhiOTM1
Best, Miro
------------------------------
Message: 10
List-Post: users@lists.open-mpi.org
Date: Tue, 24 Jan 2012 11:55:21 -0500
From: Jeff Squyres <jsquy...@cisco.com>
Subject: Re: [OMPI users] pure static "mpirun" launcher
To: Open MPI Users <us...@open-mpi.org>
Message-ID: <a86d3721-9bf8-4a7d-b745-32e606521...@cisco.com>
Content-Type: text/plain; charset=windows-1252
Ilias: Have you simply tried building Open MPI with flags that force static
linking? E.g., something like this:
./configure --enable-static --disable-shared LDFLAGS=-Wl,-static
I.e., put in LDFLAGS whatever flags your compiler/linker needs to force static
linking. These LDFLAGS will be applied to all of Open MPI's executables,
including mpirun.
On Jan 24, 2012, at 10:28 AM, Ralph Castain wrote:
> Good point! I'm traveling this week with limited resources, but will try to
> address when able.
>
> Sent from my iPad
>
> On Jan 24, 2012, at 7:07 AM, Reuti <re...@staff.uni-marburg.de> wrote:
>
>> Am 24.01.2012 um 15:49 schrieb Ralph Castain:
>>
>>> I'm a little confused. Building procs static makes sense as libraries may
>>> not be available on compute nodes. However, mpirun is only executed in one
>>> place, usually the head node where it was built. So there is less reason to
>>> build it purely static.
>>>
>>> Are you trying to move mpirun somewhere? Or is it the daemons that mpirun
>>> launches that are the real problem?
>>
>> This depends: if you have a queuing system, the master node of a parallel
>> job may be one of the slave nodes already where the jobscript runs.
>> Nevertheless I have the nodes uniform, but I saw places where it wasn't the
>> case.
>>
>> An option would be to have a special queue, which will execute the jobscript
>> always on the headnode (i.e. without generating any load) and use only
>> non-local granted slots for mpirun. For this it might be necssary to have a
>> high number of slots on the headnode for this queue, and request always one
>> slot on this machine in addition to the necessary ones on the computing node.
>>
>> -- Reuti
>>
>>
>>> Sent from my iPad
>>>
>>> On Jan 24, 2012, at 5:54 AM, Ilias Miroslav <miroslav.il...@umb.sk> wrote:
>>>
>>>> Dear experts,
>>>>
>>>> following http://www.open-mpi.org/faq/?category=building#static-build I
>>>> successfully build static OpenMPI library.
>>>> Using such prepared library I succeeded in building parallel static
>>>> executable - dirac.x (ldd dirac.x-not a dynamic executable).
>>>>
>>>> The problem remains, however, with the mpirun (orterun) launcher.
>>>> While on the local machine, where I compiled both static OpenMPI & static
>>>> dirac.x I am able to launch parallel job
>>>> <OpenMPI_static>/mpirun -np 2 dirac.x ,
>>>> I can not lauch it elsewhere, because "mpirun" is dynamically linked, thus
>>>> machine dependent:
>>>>
>>>> ldd mpirun:
>>>> linux-vdso.so.1 => (0x00007fff13792000)
>>>> libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f40f8cab000)
>>>> libnsl.so.1 => /lib/x86_64-linux-gnu/libnsl.so.1 (0x00007f40f8a93000)
>>>> libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1 (0x00007f40f888f000)
>>>> libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f40f860d000)
>>>> libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
>>>> (0x00007f40f83f1000)
>>>> libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f40f806c000)
>>>> /lib64/ld-linux-x86-64.so.2 (0x00007f40f8ecb000)
>>>>
>>>> Please how to I build "pure" static mpirun launcher, usable (in my case
>>>> together with static dirac.x) also on other computers ?
>>>>
>>>> Thanks, Miro
>>>>
>>>> --
>>>> RNDr. Miroslav Ilia?, PhD.
>>>>
>>>> Katedra ch?mie
>>>> Fakulta pr?rodn?ch vied
>>>> Univerzita Mateja Bela
>>>> Tajovsk?ho 40
>>>> 97400 Bansk? Bystrica
>>>> tel: +421 48 446 7351
>>>> email : miroslav.il...@umb.sk
>>>>
>>>> Department of Chemistry
>>>> Faculty of Natural Sciences
>>>> Matej Bel University
>>>> Tajovsk?ho 40
>>>> 97400 Banska Bystrica
>>>> Slovakia
>>>> tel: +421 48 446 7351
>>>> email : miroslav.il...@umb.sk
>>>>
>>>> _______________________________________________
>>>> users mailing list
>>>> us...@open-mpi.org
>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>
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>>>
>>
>>
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>
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--
Jeff Squyres
jsquy...@cisco.com
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