Yep, Fedora Core 14 and OpenMPI 1.4.3
On 9/24/11 7:02 AM, Jeff Squyres wrote:
Are you running the same OS version and Open MPI version between the head node
and regular nodes?
On Sep 23, 2011, at 5:27 PM, Vassenkov, Phillip wrote:
Hey all,
I’ve been racking my brains over this for several days and was hoping anyone
could enlighten me. I’ll describe only the relevant parts of the
network/computer systems. There is one head node and a multitude of regular
nodes. The regular nodes are all identical to each other. If I run an mpi
program from one of the regular nodes to any other regular nodes, everything
works. If I include the head node in the hosts file, I get segfaults which I’ll
paste below along with sample code. The machines are all networked via
infiniband and Ethernet. The issue only arises when mpi communication occurs.
By this I mean, MPi_Init might succeed but the segfault always occurs on
MPI_Barrier or MPI_send/recv. I found a work around by disabling the openib btl
and enforcing that communications go over infiniband(if I don’t force
infiniband, it’ll go over Ethernet). This command works when the head node is
included in the hosts file:
mpirun --hostfile hostfile --mca btl ^openib --mca btl_tcp_if_include ib0 -np
2 ./b.out
Sample Code:
#include "mpi.h"
#include<stdio.h>
int main(int argc, char *argv[])
{
int rank, nprocs;
char* name[20];
int maxlen = 20;
MPI_Init(&argc,&argv);
MPI_Comm_size(MPI_COMM_WORLD,&nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&rank);
MPI_Barrier(MPI_COMM_WORLD);
gethostname(name,maxlen);
printf("Hello, world. I am %d of %d and host %s \n", rank, nprocs,name);
fflush(stdout);
MPI_Finalize();
return 0;
}
Segfault:
[pastec:19917] *** Process received signal ***
[pastec:19917] Signal: Segmentation fault (11)
[pastec:19917] Signal code: Address not mapped (1)
[pastec:19917] Failing at address: 0x8
[pastec:19917] [ 0] /lib64/libpthread.so.0() [0x34a880eeb0]
[pastec:19917] [ 1] /usr/lib64/libmthca-rdmav2.so(+0x36aa) [0x7eff6430b6aa]
[pastec:19917] [ 2] /usr/lib64/openmpi/lib/openmpi/mca_btl_openib.so(+0x133c9)
[0x7eff66a163c9]
[pastec:19917] [ 3] /usr/lib64/openmpi/lib/openmpi/mca_btl_openib.so(+0x1eb70)
[0x7eff66a21b70]
[pastec:19917] [ 4] /usr/lib64/openmpi/lib/openmpi/mca_btl_openib.so(+0x1ec89)
[0x7eff66a21c89]
[pastec:19917] [ 5] /usr/lib64/openmpi/lib/openmpi/mca_btl_openib.so(+0x1403d)
[0x7eff66a1703d]
[pastec:19917] [ 6] /usr/lib64/openmpi/lib/openmpi/mca_pml_ob1.so(+0x120e6)
[0x7eff676670e6]
[pastec:19917] [ 7] /usr/lib64/openmpi/lib/openmpi/mca_pml_ob1.so(+0x6273)
[0x7eff6765b273]
[pastec:19917] [ 8] /usr/lib64/openmpi/lib/openmpi/mca_coll_tuned.so(+0x1b2f)
[0x7eff65539b2f]
[pastec:19917] [ 9] /usr/lib64/openmpi/lib/openmpi/mca_coll_tuned.so(+0xa5cf)
[0x7eff655425cf]
[pastec:19917] [10] /usr/lib64/openmpi/lib/libmpi.so.0(MPI_Barrier+0x9e)
[0x3a54c4c94e]
[pastec:19917] [11] ./b.out(main+0x6e) [0x400a42]
[pastec:19917] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x34a841ee5d]
[pastec:19917] [13] ./b.out() [0x400919]
[pastec:19917] *** End of error message ***
[pastec.gtri.gatech.edu:19913] [[18526,0],0]-[[18526,1],1]
mca_oob_tcp_msg_recv: readv failed: Connection reset by peer (104)
--------------------------------------------------------------------------
mpirun noticed that process rank 1 with PID 19917 on node
pastec.gtri.gatech.edu exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
_______________________________________________
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users
