Am 13.09.2011 um 23:18 schrieb Blosch, Edwin L: > I’m able to run this command below from an interactive shell window: > > <path>/bin/mpirun --machinefile mpihosts.dat –np 16 –mca plm_rsh_agent > /usr/bin/rsh –x MPI_ENVIRONMENT=1 ./test_setup > > but it does not work if I put it into a shell script and ‘qsub’ that script > to SGE. I get the message shown at the bottom of this post. > > I’ve tried everything I can think of. I would welcome any hints on how to > proceed. > > For what it’s worth, this OpenMPI is 1.4.3 and I built it on another system. > I am setting and exporting OPAL_PREFIX and as I said, all works fine > interactively just not in batch. It was built with –disable-shared and I > don’t see any shared libs under openmpi/lib, and I’ve done ‘ldd’ from within > the script, on both the application executable and on the orterun command; no > unresolved shared libraries. So I don’t think the error message hinting at > LD_LIBRARY_PATH issues is pointing me in the right direction.
Did you compile Open MPI with --with-sge? What's the setting of qrsh_command and qrsh_daemon in SGE (qconf -sconf) and/or do local configurations exist overwriting this (qconf -sconfl)? -- Reuti > > Thanks for any guidance, > > Ed > > > error: executing task of job 139362 failed: execution daemon on host "f8312" > didn't accept task > -------------------------------------------------------------------------- > A daemon (pid 2818) died unexpectedly with status 1 while attempting > to launch so we are aborting. > > There may be more information reported by the environment (see above). > > This may be because the daemon was unable to find all the needed shared > libraries on the remote node. You may set your LD_LIBRARY_PATH to have the > location of the shared libraries on the remote nodes and this will > automatically be forwarded to the remote nodes. > -------------------------------------------------------------------------- > -------------------------------------------------------------------------- > mpirun noticed that the job aborted, but has no info as to the process > that caused that situation. > -------------------------------------------------------------------------- > mpirun: clean termination accomplished > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
