Thanks for your assistance, Jeff. The issue has been resolved.
I discovered that on non-interactive ssh login, only .bash_rc shell
startup file gets executed.
Hence, I suppose that for Fedora, the environment variables should be
updated in:
1. $HOME/.bash_profile or /etc/profile (for the head node)
2. $HOME/.bash_rc (for all other nodes)
Regards,
Kedar Soparkar
Undergraduate (6th Semester)
B.E.(Hons.) Computer Science
BITS Pilani K.K. Birla Goa Campus, India
Email: kedarsopar...@gmail.com
BITS Email: f2008...@bits-goa.ac.in
---------- Forwarded message ----------
From: Jeff Squyres <jsquy...@cisco.com>
To: Open MPI Users <us...@open-mpi.org>
List-Post: users@lists.open-mpi.org
Date: Mon, 24 Jan 2011 15:06:30 -0500
Subject: Re: [OMPI users] bash: orted: ... / Kedar Soparkar
Is that what it reports on the remote node?
I am guessing you are just using ssh to launch remotely -- try this:
ssh othernode env | grep PATH
Ensure that the answer you get back is what you expect. Sometime
shell startup files do different things if they're invoked
interactively vs. non-interactively.
On Jan 24, 2011, at 2:01 PM, Kedar Soparkar wrote:
> The exact contents of the environment variables as reported by 'env' are:
>
> PATH=/usr/lib/qt-3.3/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/lib/ccache:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lib/openmpi/bin:/home/mpiuser/bin
> LD_LIBRARY_PATH=/usr/lib/openmpi/lib
>
> Am I missing some other variables?
>
> -Kedar
>
>> ---------- Forwarded message ----------
>> From: Reuti <re...@staff.uni-marburg.de>
>> To: Open MPI Users <us...@open-mpi.org>
>> Date: Mon, 24 Jan 2011 13:48:51 +0100
>> Subject: Re: [OMPI users] bash: orted: command not found despite env vars
>> being set
>> Am 24.01.2011 um 11:47 schrieb Kedar Soparkar:
>>
>>> I'm trying to setup a small cluster of 2 nodes.
>>>
>>> Both nodes are running Fedora 11 Kernel 2.6.29.4, have the same user
>>> mpiuser with the same password. Both of them have their env vars set
>>> as follows in /etc/profile itself:
>>
>> This is syntax for which type of shell?
>>
>>> PATH usr/lib/openmpi/bin
>>> LD_LIBRARY_PATH usr/lib/openmpi/lib
>>
>> The leading slash is missing in case you want to specify absolute paths. And
>> any set path should be retained and not be replaced:
>>
>> export PATH=/usr/lib/openmpi/bin${PATH:+:$PATH}
>> export
>> LD_LIBRARY_PATH=/usr/lib/openmpi/lib${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}
>>
>> -- Reuti
>>
>>
>>> Currently, mpirun executes successfully on either node individually.
>>> However, when trying to run over the network, I get:
>>>
>>> [mpiuser@c-199 ~]$ mpirun -np 3 --hostfile .mpi_hostfile ./a.out
>>> bash: orted: command not found
>>> --------------------------------------------------------------------------
>>> A daemon (pid 12639) died unexpectedly with status 127 while attempting
>>> to launch so we are aborting.
>>>
>>> There may be more information reported by the environment (see above).
>>>
>>> This may be because the daemon was unable to find all the needed shared
>>> libraries on the remote node. You may set your LD_LIBRARY_PATH to have the
>>> location of the shared libraries on the remote nodes and this will
>>> automatically be forwarded to the remote nodes.
>>> --------------------------------------------------------------------------
>>> --------------------------------------------------------------------------
>>> mpirun noticed that the job aborted, but has no info as to the process
>>> that caused that situation.
>>> --------------------------------------------------------------------------
>>> mpirun: clean termination accomplished
>>>
>>> What fixes should I try to get the cluster to work?
>>> _______________________________________________
>>> users mailing list
>>> us...@open-mpi.org
>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
> _______________________________________________
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
--
Jeff Squyres
jsquy...@cisco.com
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