Doesn't that indicate precisely what Prentice said? ssh isn't picking up your remote .bashrc file and executing it.
Try just doing "mpirun -n 1 -H hpcnode1 printenv" and see if you get the envars you expect from you .bashrc. If not, talk to your sysadmin about how to fix the problem - could be a system config issue, permissions on your .bashrc (typical source of this kind of trouble), etc. On May 10, 2010, at 6:15 AM, Miguel Ángel Vázquez wrote: > Version: OMPI 1.3.3 > > Shell: bash > > I already fixed the problem with a shell script like > #!/bin/sh > export LD_LIBRARY_PATH= ... > ./montecarlo > > But, it seems that openmpi look neither bash_profile not .bashrc. > > Thank you, > > Miguel > > 2010/5/10 Ralph Castain <r...@open-mpi.org> > What version of OMPI? What shell? > > On May 10, 2010, at 2:05 AM, Miguel Ángel Vázquez wrote: > >> Hello Prentice, >> >> Thank you for your advice but that doesn't solve the problem. >> >> The non-login bash updates properly the $LD_LIBRARY_PATH value. >> >> Any other idea? >> >> Thanks, >> >> Miguel >> >> 2010/5/7 Prentice Bisbal <prent...@ias.edu> >> >> >> Miguel Ángel Vázquez wrote: >> > Dear all, >> > >> > I am trying to run a C++ program which uses dynamic libraries under mpi. >> > >> > The compilation command looks like: >> > >> > mpiCC `pkg-config --cflags itpp` -o montecarlo montecarlo.cpp >> > `pkg-config --libs itpp` >> > >> > And it works if I executed it in one machine: >> > >> > mpirun -np 2 -H localhost montecarlo >> > >> > I tested this both in the "master node" and in the "compute nodes" and >> > it works. However, when I try to run it with two different machines: >> > >> > mpirun -np 2 -H localhost,hpcnode1 montecarlo >> > >> > The program claims that it can't find the shared libraries: >> > >> > montecarlo: error while loading shared libraries: libitpp.so.6: cannot >> > open shared object file: No such file or directory >> > >> > The LD_LIBRARY_PATH is set properly at every machine, any idea where the >> > problem is? I attached you the config.log and the result of the omp-info >> > --all >> > >> > Thank you in advance, >> > >> > Miguel >> >> Miguel, >> >> Shells behave differently depending on whether it is an interactive >> login shell or a non-interactive shell. For example, the bash shell uses >> .bash_profile in case, but .bashrc in the other. Check the documentation >> for your shell and see what files it uses in each case, and make sure >> the non-login config file has the necessary settings for your MPI jobs. >> It sounds like your login shell environment is okay, but your non-login >> environment isn't setup correctly. This is a common problem. >> >> I use bash, and to keep it simple, my .bash_profile is just a symbolic >> link to .bashrc. That way, both shell types have the same environment. >> This isn't always a good idea, but in my case it's fine. >> >> -- >> Prentice >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
