Strange - can you check your prefix/lib area to see if there are any *paffinity* libs in it? For some reason, it looks like nothing built.
On May 4, 2010, at 5:37 PM, David Logan wrote: > Hi All, > > I'm having problems withe openmpi 1.4.1 and am receiving the following error > message when I try to run a test job. > > [root@hydra ~]# mpirun -n 2 --prefix `dirname $MPILIBDIR` -v -show-progress > -machinefile ./nodes.to.use -pernode ./dml_test > -------------------------------------------------------------------------- > It looks like opal_init failed for some reason; your parallel process is > likely to abort. There are many reasons that a parallel process can > fail during opal_init; some of which are due to configuration or > environment problems. This failure appears to be an internal failure; > here's some additional information (which may only be relevant to an > Open MPI developer): > > opal_paffinity_base_select failed > --> Returned value -13 instead of OPAL_SUCCESS > -------------------------------------------------------------------------- > [hydra:10645] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file > runtime/orte_init.c at line 77 > [hydra:10645] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file orterun.c > at line 541 > > I have built openmpi with the following configure options > > ./configure --with-gm=/usr/local/gm > --prefix=/opt/apps/system/openmpi/1.4.1/intel > > and it appears to build correctly, finds the right libraries and generally > doesn't have too much of a problem. > > This was built on > > Linux hydra 2.6.18-164.el5 #1 SMP Thu Sep 3 03:33:56 EDT 2009 i686 i686 i386 > GNU/Linux > > and after reading the docs, trawling the archives, I can't find much that > resembles the errors noted above. > > Does anybody have any idea or pointers on where to look or what to debug? > > Thanks and regards > David > > -- > > David Logan > eResearch SA, ARCS Grid Administrator > Level 1, School of Physics and Chemistry > North Terrace, Adelaide, 5005 > > (W) 08 8303 7301 > (M) 0458 631 117 > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
