Looks to me like you have an error in the openmpi module file... On Apr 27, 2010, at 6:38 AM, Frederik Himpe wrote:
> I'm using SGE 6.1 and OpenMPI 1.4.1 built with gridengine support. > > I've got this parallel environment defined in SGE: > > pe_name openmpi > slots 100 > user_lists NONE > xuser_lists NONE > start_proc_args /bin/true > stop_proc_args /bin/true > allocation_rule $fill_up > control_slaves TRUE > job_is_first_task FALSE > urgency_slots min > > OpenMPI is installed in its own prefix > (/shared/apps/openmpi/gcc-4.4/1.4.1), and can be loaded by the > environment module (http://modules.sourceforge.net/) openmpi. > > Now I can successfully run this pe job: > > #!/bin/bash > #$ -N test > #$ -q all.q > #$ -pe openmpi 20 > #$ -cwd > > . /etc/profile.d/modules.sh > module add sge gmp mpfr gcc openmpi/gcc-4.4 > > mpirun -np $NSLOTS hostname > > This script results in empty test.p[oe]* files and a test.o* file with > different node hostnames, but test.e* contains these errors: > > bash: module: line 1: syntax error: unexpected end of file > bash: error importing function definition for `module' > bash: module: line 1: syntax error: unexpected end of file > bash: error importing function definition for `module' > > It seems somehow the module environment tools are called in a wrong way, > but I cannot figure out how this happens. These errors are triggered by > the mpirun command (commenting out mpirun and just leaving the rest of > the script intact, does not result in these errors.). I cannot reproduce > these errors with any other kind of job, nor do they happen when I login > to any node with ssh or when running the bash command. > > So, what exactly does mpirun call which might trigger this error? > > -- > Frederik Himpe <fhi...@vub.ac.be> > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
