This problem has been solved and yes I accidentally deleted the #'s. Thank you so much!
Steve List-Post: users@lists.open-mpi.org Date: Tue, 5 Jan 2010 06:29:50 -0600 > From: pat.o'bry...@exxonmobil.com <pat.o%27bry...@exxonmobil.com> > Subject: Re: [OMPI users] Cannot get OpenMPI 1.3.3 to work with Torque > 2.4.2 > To: Open MPI Users <us...@open-mpi.org> > Message-ID: > < > of72cb36bf.5608f73d-on862576a2.00446c40-862576a2.0044a...@exxonmobil.com> > > Content-Type: text/plain; charset=US-ASCII > > > > I believe the problem is a missing "#" character. So, the correct way to > specify aTorque/PBS parameter is: > > #PBS -N Test > > Since you specified "PBS -N Test" you are getting the message "PBS" not > found. "PBS" is being interpreted as a command and not a parameter. > > > J.W. (Pat) O'Bryant,Jr. > Business Line Infrastructure > Technical Systems, HPC > > > > > Ralph Castain > <rhc@open-mpi. > org> To > Sent by: Open MPI Users <us...@open-mpi.org> > users-bounces@ cc > open-mpi.org > Subject > Re: [OMPI users] Cannot get OpenMPI > 01/04/10 11:50 1.3.3 to work with Torque 2.4.2 > PM > > > Please respond > to > Open MPI Users > <users@open-mp > i.org> > > > > > > > > > I suggest you contact the Torque user list about this - it is a Torque > configuration issue, not something to do with OMPI. > > On Jan 3, 2010, at 10:49 PM, chih lee wrote: > > Hello, > > I followed the instructions on the FAQ page to configure and compile > openmpi so that it should work with Torque. > ./configure --with-tm=/usr/local --prefix=/usr/local > The option --disable-server was used to configure torque on the > compute nodes. > I got openmpi compiled without any error message on the head and > compute nodes. > > I can use > $ mpirun -np 2 --host node1,node2 a.out > to run parallel programs without any problem. > > However, when I submit the following script with qsub > > ____________________________________________________________________ > #!/bin/sh > # > PBS -N Test > PBS -o /home2/user2/test.sh.o > PBS -l nodes=8 > mpirun /home2/user2/a.out # a.out simply prints out # of procs and > its ID > ____________________________________________________________________ > > I got the following output and error messages. > > Output: > N. of procs = 1, proc ID = 0 > > Error messages: > /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 3: PBS: not > found > /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 4: PBS: not > found > /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 5: PBS: not > found > /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 6: PBS: not > found > /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 7: PBS: not > found > /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 8: PBS: not > found > > I'm new to OpenMPI and Torque. I really appreciate it if you can give > me some insights. Thanks! > > Best, > Steve > > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > >
