Looks to me like you may be picking up an earlier version when you
launch. At least, when I look at the error message, it says that it
came from a file in the openmpi-1.3 directory tree. Yet you say you
installed 1.3.2 and 1.3.3.
Any chance your ld_library_path is pointing at the older version?
On Oct 17, 2009, at 11:29 AM, Oswald Benedikt wrote:
Dear open-mpi users / developers, maybe this problem has been
treated before but at least I can not find it:
I have tried both open mpi 1.3.2 and 1.3.3 on Mac OS X (10.5.8).
Compilation and installation of openmpi
works well, also compilation and linking of users applications.
However, when I want to start an application
with mpirun, it crashes, both for open mpi 1.3.3. and 1.3.2 as
follows:
benedikt-oswalds-macbook-pro:mieScatteringDispersive benediktoswald$
mpirun -np 2 ../../../hades3d/hades3d --option-
file=mieScatteringDispersive.job
[benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0]
ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
mca/ess/env/ess_env_module.c at line 235
[benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0]
ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
mca/ess/env/ess_env_module.c at line 261
[benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/
orte/mca/ess/base/ess_base_nidmap.c at line 153
[benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
mca/ess/env/ess_env_module.c at line 235
[benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/
orte/mca/ess/base/ess_base_nidmap.c at line 153
[benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
mca/ess/env/ess_env_module.c at line 261
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process
is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or
environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
orte_grpcomm_modex failed
--> Returned "Not found" (-13) instead of "Success" (0)
--------------------------------------------------------------------------
*** An error occurred in MPI_Init
*** before MPI was initialized
*** MPI_ERRORS_ARE_FATAL (your MPI job will now abort)
[benedikt-oswalds-macbook-pro.local:50794] Abort before MPI_INIT
completed successfully; not able to guarantee that all other
processes were killed!
[benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
mca/ess/env/ess_env_module.c at line 297
[benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
mca/grpcomm/bad/grpcomm_bad_module.c at line 559
--------------------------------------------------------------------------
mpirun has exited due to process rank 1 with PID 50794 on
node benedikt-oswalds-macbook-pro.local exiting without calling
"finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------
Can anyone comment on this ? Is this a basic installation or path
problem ?
openmpi 1.3 does not show this problem.
Thanks, Benedikt
------------------------------------------------------------------------------------------------------------------
Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch,
Computational Accelerator Scientist
Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse, benedikt.osw...@psi.ch
, +41(0)56 310 32 12
"Passion is required for any great work, and for the Revolution
passion and audacity are required in big doses.",
Ernesto 'Che' Guevara, Letter to his parents.
http://maxwell.psi.ch/amaswiki/index.php/User:BenediktOswald
------------------------------------------------------------------------------------------------------------------
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