Message: 1
Date: Fri, 14 Aug 2009 14:21:30 +0100
From: Alan <alanwil...@gmail.com>
Subject: [OMPI users] openmpi with xgrid
To: us...@open-mpi.org
Message-ID:
<cf58c8d00908140621v18d384f2wef97ee80ca3de...@mail.gmail.com>
Content-Type: text/plain; charset="utf-8"
Hi there,
I saw that http://www.open-mpi.org/community/lists/users/2007/08/3900.php
.
I use fink, and so I changed the openmpi.info file in order to get
openmpi
with xgrid support.
As you can see:
amadeus[2081]:~/Downloads% /sw/bin/ompi_info
Package: Open MPI root@amadeus.local Distribution
Open MPI: 1.3.3
Open MPI SVN revision: r21666
Open MPI release date: Jul 14, 2009
Open RTE: 1.3.3
Open RTE SVN revision: r21666
Open RTE release date: Jul 14, 2009
OPAL: 1.3.3
OPAL SVN revision: r21666
OPAL release date: Jul 14, 2009
Ident string: 1.3.3
Prefix: /sw
Configured architecture: x86_64-apple-darwin9
Configure host: amadeus.local
Configured by: root
Configured on: Fri Aug 14 12:58:12 BST 2009
Configure host: amadeus.local
Built by:
Built on: Fri Aug 14 13:07:46 BST 2009
Built host: amadeus.local
C bindings: yes
C++ bindings: yes
Fortran77 bindings: yes (single underscore)
Fortran90 bindings: yes
Fortran90 bindings size: small
C compiler: gcc
C compiler absolute: /sw/var/lib/fink/path-prefix-10.6/gcc
C++ compiler: g++
C++ compiler absolute: /sw/var/lib/fink/path-prefix-10.6/g++
Fortran77 compiler: gfortran
Fortran77 compiler abs: /sw/bin/gfortran
Fortran90 compiler: gfortran
Fortran90 compiler abs: /sw/bin/gfortran
C profiling: yes
C++ profiling: yes
Fortran77 profiling: yes
Fortran90 profiling: yes
C++ exceptions: no
Thread support: posix (mpi: no, progress: no)
Sparse Groups: no
Internal debug support: no
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
libltdl support: yes
Heterogeneous support: no
mpirun default --prefix: no
MPI I/O support: yes
MPI_WTIME support: gettimeofday
Symbol visibility support: yes
FT Checkpoint support: no (checkpoint thread: no)
MCA backtrace: execinfo (MCA v2.0, API v2.0, Component
v1.3.3)
MCA paffinity: darwin (MCA v2.0, API v2.0, Component v1.3.3)
MCA carto: auto_detect (MCA v2.0, API v2.0, Component
v1.3.3)
MCA carto: file (MCA v2.0, API v2.0, Component v1.3.3)
MCA maffinity: first_use (MCA v2.0, API v2.0, Component
v1.3.3)
MCA timer: darwin (MCA v2.0, API v2.0, Component v1.3.3)
MCA installdirs: env (MCA v2.0, API v2.0, Component v1.3.3)
MCA installdirs: config (MCA v2.0, API v2.0, Component v1.3.3)
MCA dpm: orte (MCA v2.0, API v2.0, Component v1.3.3)
MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.3.3)
MCA allocator: basic (MCA v2.0, API v2.0, Component v1.3.3)
MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.3.3)
MCA coll: basic (MCA v2.0, API v2.0, Component v1.3.3)
MCA coll: hierarch (MCA v2.0, API v2.0, Component
v1.3.3)
MCA coll: inter (MCA v2.0, API v2.0, Component v1.3.3)
MCA coll: self (MCA v2.0, API v2.0, Component v1.3.3)
MCA coll: sm (MCA v2.0, API v2.0, Component v1.3.3)
MCA coll: sync (MCA v2.0, API v2.0, Component v1.3.3)
MCA coll: tuned (MCA v2.0, API v2.0, Component v1.3.3)
MCA io: romio (MCA v2.0, API v2.0, Component v1.3.3)
MCA mpool: fake (MCA v2.0, API v2.0, Component v1.3.3)
MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.3.3)
MCA mpool: sm (MCA v2.0, API v2.0, Component v1.3.3)
MCA pml: cm (MCA v2.0, API v2.0, Component v1.3.3)
MCA pml: csum (MCA v2.0, API v2.0, Component v1.3.3)
MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.3.3)
MCA pml: v (MCA v2.0, API v2.0, Component v1.3.3)
MCA bml: r2 (MCA v2.0, API v2.0, Component v1.3.3)
MCA rcache: vma (MCA v2.0, API v2.0, Component v1.3.3)
MCA btl: self (MCA v2.0, API v2.0, Component v1.3.3)
MCA btl: sm (MCA v2.0, API v2.0, Component v1.3.3)
MCA btl: tcp (MCA v2.0, API v2.0, Component v1.3.3)
MCA topo: unity (MCA v2.0, API v2.0, Component v1.3.3)
MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.3.3)
MCA osc: rdma (MCA v2.0, API v2.0, Component v1.3.3)
MCA iof: hnp (MCA v2.0, API v2.0, Component v1.3.3)
MCA iof: orted (MCA v2.0, API v2.0, Component v1.3.3)
MCA iof: tool (MCA v2.0, API v2.0, Component v1.3.3)
MCA oob: tcp (MCA v2.0, API v2.0, Component v1.3.3)
MCA odls: default (MCA v2.0, API v2.0, Component
v1.3.3)
MCA ras: slurm (MCA v2.0, API v2.0, Component v1.3.3)
MCA rmaps: rank_file (MCA v2.0, API v2.0, Component
v1.3.3)
MCA rmaps: round_robin (MCA v2.0, API v2.0, Component
v1.3.3)
MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.3.3)
MCA rml: oob (MCA v2.0, API v2.0, Component v1.3.3)
MCA routed: binomial (MCA v2.0, API v2.0, Component
v1.3.3)
MCA routed: direct (MCA v2.0, API v2.0, Component v1.3.3)
MCA routed: linear (MCA v2.0, API v2.0, Component v1.3.3)
MCA plm: rsh (MCA v2.0, API v2.0, Component v1.3.3)
MCA plm: slurm (MCA v2.0, API v2.0, Component v1.3.3)
MCA plm: xgrid (MCA v2.0, API v2.0, Component v1.3.3)
MCA filem: rsh (MCA v2.0, API v2.0, Component v1.3.3)
MCA errmgr: default (MCA v2.0, API v2.0, Component
v1.3.3)
MCA ess: env (MCA v2.0, API v2.0, Component v1.3.3)
MCA ess: hnp (MCA v2.0, API v2.0, Component v1.3.3)
MCA ess: singleton (MCA v2.0, API v2.0, Component
v1.3.3)
MCA ess: slurm (MCA v2.0, API v2.0, Component v1.3.3)
MCA ess: tool (MCA v2.0, API v2.0, Component v1.3.3)
MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.3.3)
MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.3.3)
All seemed fine and I also have xgrid controller and agent running
in my
laptop, and then when I tried:
/sw/bin/om-mpirun -c 2 mpiapp # hello world example for mpi
[amadeus.local:40293] [[804,0],0] ORTE_ERROR_LOG: Unknown error: 1
in file
src/plm_xgrid_module.m at line 119
[amadeus.local:40293] [[804,0],0] ORTE_ERROR_LOG: Unknown error: 1
in file
src/plm_xgrid_module.m at line 153
--------------------------------------------------------------------------
om-mpirun was unable to start the specified application as it
encountered an
error.
More information may be available above.
--------------------------------------------------------------------------
2009-08-14 14:16:19.715 om-mpirun[40293:10b] *** Terminating app due
to
uncaught exception 'NSInvalidArgumentException', reason: '***
-[NSKVONotifying_XGConnection<0x1001164b0> finalize]: called when
collecting
not enabled'
2009-08-14 14:16:19.716 om-mpirun[40293:10b] Stack: (
140735390096156,
140735366109391,
140735390122388,
4295943988,
4295939168,
4295171139,
4295883300,
4295025321,
4294973498,
4295401605,
4295345774,
4295056598,
4295116412,
4295119970,
4295401605,
4294972881,
4295401605,
4295345774,
4295056598,
4295172615,
4295938185,
4294971936,
4294969401,
4294969340
)
terminate called after throwing an instance of 'NSException'
[amadeus:40293] *** Process received signal ***
[amadeus:40293] Signal: Abort trap (6)
[amadeus:40293] Signal code: (0)
[amadeus:40293] [ 0] 2 libSystem.B.dylib
0x00000000831443fa _sigtramp + 26
[amadeus:40293] [ 1] 3 ???
0x000000005fbfb1e8 0x0 + 1606398440
[amadeus:40293] [ 2] 4 libstdc++.6.dylib
0x00000000827f2085 _ZN9__gnu_cxx27__verbose_terminate_handlerEv + 377
[amadeus:40293] [ 3] 5 libobjc.A.dylib
0x0000000081811adf objc_end_catch + 280
[amadeus:40293] [ 4] 6 libstdc++.6.dylib
0x00000000827f0425 __gxx_personality_v0 + 1259
[amadeus:40293] [ 5] 7 libstdc++.6.dylib
0x00000000827f045b _ZSt9terminatev + 19
[amadeus:40293] [ 6] 8 libstdc++.6.dylib
0x00000000827f054c __cxa_rethrow + 0
[amadeus:40293] [ 7] 9 libobjc.A.dylib
0x0000000081811966 objc_exception_rethrow + 0
[amadeus:40293] [ 8] 10 CoreFoundation
0x0000000082ef8194 _CF_forwarding_prep_0 + 5700
[amadeus:40293] [ 9] 11 mca_plm_xgrid.so
0x00000000000ee734 orte_plm_xgrid_finalize + 4884
[amadeus:40293] [10] 12 mca_plm_xgrid.so
0x00000000000ed460 orte_plm_xgrid_finalize + 64
[amadeus:40293] [11] 13 libopen-rte.0.dylib
0x0000000000031c43 orte_plm_base_close + 195
[amadeus:40293] [12] 14 mca_ess_hnp.so
0x00000000000dfa24 0x0 + 916004
[amadeus:40293] [13] 15 libopen-rte.0.dylib
0x000000000000e2a9 orte_finalize + 89
[amadeus:40293] [14] 16 om-mpirun
0x000000000000183a start + 4210
[amadeus:40293] [15] 17 libopen-pal.0.dylib
0x000000000006a085 opal_event_add_i + 1781
[amadeus:40293] [16] 18 libopen-pal.0.dylib
0x000000000005c66e opal_progress + 142
[amadeus:40293] [17] 19 libopen-rte.0.dylib
0x0000000000015cd6 orte_trigger_event + 70
[amadeus:40293] [18] 20 libopen-rte.0.dylib
0x000000000002467c orte_daemon_recv + 4332
[amadeus:40293] [19] 21 libopen-rte.0.dylib
0x0000000000025462 orte_daemon_cmd_processor + 722
[amadeus:40293] [20] 22 libopen-pal.0.dylib
0x000000000006a085 opal_event_add_i + 1781
[amadeus:40293] [21] 23 om-mpirun
0x00000000000015d1 start + 3593
[amadeus:40293] [22] 24 libopen-pal.0.dylib
0x000000000006a085 opal_event_add_i + 1781
[amadeus:40293] [23] 25 libopen-pal.0.dylib
0x000000000005c66e opal_progress + 142
[amadeus:40293] [24] 26 libopen-rte.0.dylib
0x0000000000015cd6 orte_trigger_event + 70
[amadeus:40293] [25] 27 libopen-rte.0.dylib
0x0000000000032207 orte_plm_base_launch_failed + 135
[amadeus:40293] [26] 28 mca_plm_xgrid.so
0x00000000000ed089 orte_plm_xgrid_spawn + 89
[amadeus:40293] [27] 29 om-mpirun
0x0000000000001220 start + 2648
[amadeus:40293] [28] 30 om-mpirun
0x0000000000000839 start + 113
[amadeus:40293] [29] 31 om-mpirun
0x00000000000007fc start + 52
[amadeus:40293] *** End of error message ***
[1] 40293 abort /sw/bin/om-mpirun -c 2 mpiapp
Is there anyone using openmpi with xgrid successfully keen to share
his/her
experience? I am not new to xgrid or mpi, but to both integrated I
must say
that I am in uncharted waters.
Any help would be very appreciated.
Many thanks in advance,
Alan
--
Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
http://www.bio.cam.ac.uk/~awd28<<
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