Hi, Thank you for the tip, this seems to be what I was looking for.
Matthieu 2009/5/7 Mehdi Bozzo-Rey <mbozz...@platform.com>: > Hello Jeroen, > > > > There are 2 ways of launching OpenMPI jobs (using a recent version of LSF): > > 1. The one you have just described; it uses the generic PJL (Parallel > Job Launcher) framework. You can easily recognise it because of the use of > the –a openmpi flag and mpirun.lsf > > 2. In recent versions of LSF, another framework is also available, and > it permits a tight (native) integration with the MPIs (this is why there is > the OpenMPI integration) > > > > So, for 1., a typical command line would be, as you mentioned, something > like: > > > > bsub -o %J.out -e %J.err -n 4 -R "span[ptile=1]" -a openmpi mpirun.lsf > ./test > > > > And for 2., you would use something like: > > > > bsub -o %J.out -e %J.err -n 4 -R "span[ptile=1]" mpirun ./test > > > > Cheers, > > > > Mehdi > > > > > > > > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Jeroen Kleijer > Sent: May-05-09 9:26 AM > To: Open MPI Users > Subject: Re: [OMPI users] LSF launch with OpenMPI > > > > If you wish to submit to lsf using its native commands (bsub) you can do the > following: > > > > bsub -q ${QUEUE} -a openmpi -n ${CPUS} "mpirun.lsf -x PATH -x > LD_LIBRARY_PATH -x MPI_BUFFER_SIZE ${COMMAND} ${OPTIONS}" > > > > It should be noted that in this case you don't call OpenMPI's mpirun > directly but use the mpirun.lsf, a wrapper script provided by LSF. This > wrapper script takes care of setting the necessary environment variables and > eventually calls the correct mpirun. (the option "-a openmpi" tells LSF that > we're using OpenMPI so don't try to autodetect) > > > > Regards, > > > > Jeroen Kleijer > > On Tue, May 5, 2009 at 2:23 PM, Jeff Squyres <jsquy...@cisco.com> wrote: > > On May 5, 2009, at 6:10 AM, Matthieu Brucher wrote: > > The first is what the support of LSF by OpenMPI means. When mpirun is > executed, it is an LSF job that is actually ran? Or what does it > imply? I've tried to search on the openmpi website as well as on the > internet, but I couldn't find a clear answer/use case. > > > > What Terry said is correct. It means that "mpirun" will use, under the > covers, the "native" launching mechanism of LSF to launch jobs (vs., say, > rsh or ssh). It'll also discover the hosts to use for this job without the > use of a hostfile -- it'll query LSF directly to see what hosts it should > use. > > My second question is about the LSF detection. lsf.h is detected, but > when lsb_launch is searched for ion libbat.so, it fails because > parse_time and parse_time_ex are not found. Is there a way to add > additional lsf libraries so that the search can be done? > > Can you send all the data shown here: > > http://www.open-mpi.org/community/help/ > > -- > Jeff Squyres > Cisco Systems > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > -- Information System Engineer, Ph.D. Website: http://matthieu-brucher.developpez.com/ Blogs: http://matt.eifelle.com and http://blog.developpez.com/?blog=92 LinkedIn: http://www.linkedin.com/in/matthieubrucher
