Dear Users, I have posted this problem before, but still I am trying to solve it so I put it again so that maybe you can help me. I run my simulating code in a system with Intel Core 2 Quad, 4x2.4 GHz cpu, with 7.9 GiB memopry. My linux is opensuse 11.0 with gfortran compiler.
I have installed openmpi together with blacs and scalapack from http://www.netlib.org/scalapack/scalapack_installer.tgz.They both have been installed smoothly with no problem. I have also compiled and installed my code "SIESTA" in parallel with no problem. But when I execute the following command: mpirun -np 4 ../../Src/siesta <input> output I receive the following message and the process is killed: mpirun noticed that job rank 0 with PID 13234 on node linux-4pel exited on signal 15 (Terminated). After I run the input with debugger I receive the follwing messages: mpirun --debug-daemons -np 4 ../../Src/siesta <input> output Daemon [0,0,1] checking in as pid 13286 on host linux-4pel [linux-4pel:13286] [0,0,1] orted: received launch callback [linux-4pel:13286] [0,0,1] orted_recv_pls: received message from [0,0,0] [linux-4pel:13286] [0,0,1] orted_recv_pls: received kill_local_procs mpirun noticed that job rank 0 with PID 13287 on node linux-4pel exited on signal 15 (Terminated). [linux-4pel:13286] [0,0,1] orted_recv_pls: received message from [0,0,0] [linux-4pel:13286] [0,0,1] orted_recv_pls: received exit [linux-4pel:13286] [0,0,1] ORTE_ERROR_LOG: Not found in file .../../../../../orte/mca/odls/default/odls_default_module.c at line 540 [linux-4pel:13286] [0,0,1] ORTE_ERROR_LOG: Not found in file .../../../../../orte/mca/odls/default/odls_default_module.c at line 540 I have enclosed a copy of the "arch.make" of the code in which I have to make changes to compile the code in parallel. Please let me know how to solve the said problem. Regards, Hana # # This file is part of the SIESTA package. # # Copyright (c) Fundacion General Universidad Autonoma de Madrid: # E.Artacho, J.Gale, A.Garcia, J.Junquera, P.Ordejon, D.Sanchez-Portal # and J.M.Soler, 1996-2006. # # Use of this software constitutes agreement with the full conditions # given in the SIESTA license, as signed by all legitimate users. # ..SUFFIXES: ..SUFFIXES: .f .F .o .a .f90 .F90 SIESTA_ARCH=i686-pc-linux-gnu--Gfortran FPP= FPP_OUTPUT= FC=/home/sara/mpich2-1.0.8/bin/mpif90 RANLIB=ranlib SYS=nag SP_KIND=4 DP_KIND=8 KINDS=$(SP_KIND) $(DP_KIND) FFLAGS=-g -O2 FPPFLAGS= -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT LDFLAGS= ARFLAGS_EXTRA= FCFLAGS_fixed_f= FCFLAGS_free_f90= FPPFLAGS_fixed_F= FPPFLAGS_free_F90= BLAS_LIBS=/home/sara/scalapack_installer_0.94/lib/librefblas.a LAPACK_LIBS=/home/sara/scalapack_installer_0.94/lib/libreflapack.a BLACS_LIBS=/home/sara/scalapack_installer_0.94/lib/blacs.a /home/sara/scalapack_installer_0.94/lib/blacsC.a SCALAPACK_LIBS=/home/sara/scalapack_installer_0.94/lib/libscalapack.a COMP_LIBS=dc_lapack.a liblapack.a libblas.a NETCDF_LIBS= NETCDF_INTERFACE= LIBS=$(SCALAPACK_LIBS) $(BLACS_LIBS) $(LAPACK_LIBS) $(BLAS_LIBS) $(NETCDF_LIBS) #SIESTA needs an F90 interface to MPI #This will give you SIESTA's own implementation #If your compiler vendor offers an alternative, you may change #to it here. MPI_INTERFACE=libmpi_f90.a MPI_HOME=$/home/sara/mpich2-1.0.8 MPI_INCLUDE=$/home/sara/mpich2-1.0.8/src/include MPI_LIB=$/home/sara/mpich2-1.0.8/lib DEFS_MPI=-DMPI #Dependency rules are created by autoconf according to whether #discrete preprocessing is necessary or not. ..F.o: $(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $(FPPFLAGS_fixed_F) $< ..F90.o: $(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $(FPPFLAGS_free_F90) $< ..f.o: $(FC) -c $(FFLAGS) $(INCFLAGS) $(FCFLAGS_fixed_f) $< ..f90.o: $(FC) -c $(FFLAGS) $(INCFLAGS) $(FCFLAGS_free_f90) $<
