Hello all, The MPI-Blast-PIO-1.5.0 is installed with Open MPI 1.2.8 + intel 10 compilers on Rocks-4.3 + Voltaire Infiniband + Voltaire Grid stack OFA roll.
The 8 process parallel job is submitted through SGE: $ cat sge_submit.sh #!/bin/bash #$ -N OMPI-Blast-Job #$ -S /bin/bash #$ -cwd #$ -e err.$JOB_ID.$JOB_NAME #$ -o out.$JOB_ID.$JOB_NAME #$ -pe orte 8 export LD_LIBRARY_PATH=/opt/openmpi_intel/1.2.8/lib:/opt/intel/cce/10.1.018/lib:/opt/gridengine/lib/lx26-amd64 #$ -V /opt/openmpi_intel/1.2.8/bin/mpirun -np $NSLOTS /opt/apps/mpiblast-150-pio_OMPI/bin/mpiblast -p blastp -d Mtub_CDC1551_.faa -i 586_seq.fasta -o test8.out Everytime it is failing with folowing error message: $ cat err.117.OMPI-Blast-Job [0,1,7][btl_openib_component.c:1371:btl_openib_component_progress] from compute-0-5.local to: compute-0-11.local error polling HP CQ with status LOCAL LENGTH ERROR status number 1 for wr_id 11990008 opcode 42 4 0.481518 Bailing out with signal 15 [compute-0-5.local:25702] MPI_ABORT invoked on rank 4 in communicator MPI_COMM_WORLD with errorcode 0 5 0.487255 Bailing out with signal 15 [compute-0-5.local:25703] MPI_ABORT invoked on rank 5 in communicator MPI_COMM_WORLD with errorcode 0 6 0.658543 Bailing out with signal 15 [compute-0-5.local:25704] MPI_ABORT invoked on rank 6 in communicator MPI_COMM_WORLD with errorcode 0 0 0.481974 Bailing out with signal 15 [compute-0-11.local:25698] MPI_ABORT invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 0 1 0.660788 Bailing out with signal 15 [compute-0-11.local:25699] MPI_ABORT invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 0 2 0.67406 Bailing out with signal 15 [compute-0-11.local:25700] MPI_ABORT invoked on rank 2 in communicator MPI_COMM_WORLD with errorcode 0 3 0.680739 Bailing out with signal 15 [compute-0-11.local:25701] MPI_ABORT invoked on rank 3 in communicator MPI_COMM_WORLD with errorcode 0 This happens only with MPIBlast. The parallel gromacs jobs run very well. Let me know why this error is appering & how to resolve it? Is it due to Rocks Gridstack OFA roll? Thanks, Sangamesh
