Is your C++ compiler installer properly? Can you build and run other C
++ programs that use the STL?
On Apr 22, 2008, at 5:01 AM, kopp...@aim.com wrote:
Hello there,
I downloaded openmpi-1.2.5.tar and "un-tar"'ed it with tar -xvf
openmpi-1.2.5.tar which created a directory openmpi-1.2.5.
I then created a build directory and called
../openmpi-1.2.5/configure --prefix=$home/openmpi FC=ifort64
F77=ifort64 F95=ifort64 CC=icc64 CXX=icpc | & tee config.out
Everything went fine.
I then said : make -j 8 | & tee make.out and the compilation crashed
with:
/bin/sh ../../../libtool --tag=CXX --mode=link icpc -O3 -DNDEBUG -
finline-functions -pthread -export-dynamic -o libmpi_cxx.la -
rpath /usr/people/camm/kopposa1/openmpi/lib mpicxx.lo intercepts.lo
comm.lo datatype.lo file.lo win.lo -lnsl -lutil
libtool: link: icpc -shared .libs/mpicxx.o .libs/intercepts.o .libs/
comm.o .libs/datatype.o .libs/file.o .libs/win.o -lnsl -lutil -L/
usr/prog/intel/cce/101015/lib -L/usr/lib/gcc/x86_64-redhat-linux/
3.4.6/ -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64 -
limf -lsvml -lipgo /usr/people/camm/kopposa1/gcc64/lib/../lib64/
libstdc++.a -L/scratch/gcc/x86_64-unknown-linux-gnu/libstdc++-v3/src
-L/scratch/gcc/x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/
scratch/gcc/./gcc -L/lib/../lib64 -L/usr/lib/../lib64 -lm -lgcc -
lintlc -lpthread -lgcc_s -lirc_s -ldl -lc -pthread -pthread -Wl,-
soname -Wl,libmpi_cxx.so.0 -o .libs/libmpi_cxx.so.0.0.0
ld: /usr/people/camm/kopposa1/gcc64/lib/../lib64/libstdc+
+.a(ios_init.o): relocation R_X86_64_32 against `pthread_cancel' can
not be used when making a shared object; recompile with -fPIC
/usr/people/camm/kopposa1/gcc64/lib/../lib64/libstdc++.a: could not
read symbols: Bad value
make[3]: *** [libmpi_cxx.la] Error 1
make[3]: Leaving directory `/scratch/openmpi/ompi/mpi/cxx'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/scratch/openmpi/ompi/mpi'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/scratch/openmpi/ompi'
make: *** [all-recursive] Error 1
FYI: I am attaching the zipped make.out and config.out files.
Thanks a lot for your help,
Cheers,
Sampath.
Sampath Koppole,
The Computational Molecular Biophysics Group,
Interdisciplinary Center for Scientific Computing (IWR),
368, Im Neuenheimer Feld,
Heidelberg. D-69120.
Germany.
Web Home : http://www.sampath.koppole.com
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Cisco Systems
