Hi,
it's my fist message here so greetings to everyone (and sorry about my
poor english) :-)
I'm coding a parallel algorithm and I've decided to upgrade the
openmpi
version used in our cluster (1.2.3) this week. After that, problems
arise :-/
There seems to be any problem with multithreding support in OpenMPI
1.2.4, at
least in my installation. Problem appears when more than one process
per node is spawned. A simple *hello world* program (with no snd/
rcvs) works
ok in MPI_THREAD_SINGLE mode, but when I tried MPI_THREAD_MULTIPLE
this
error arises:
/opt/openmpi/bin/mpirun -np 2 -machinefile /home/users/emilioj/
machinefileOpenMPI --debug-daemons justhi
Daemon [0,0,1] checking in as pid 5446 on host c0-0
[pvfs2-compute-0-0.local:05446] [0,0,1] orted: received launch
callback
[pvfs2-compute-0-0:05447] *** Process received signal ***
[pvfs2-compute-0-0:05447] Signal: Segmentation fault (11)
[pvfs2-compute-0-0:05447] Signal code: Address not mapped (1)
[pvfs2-compute-0-0:05447] Failing at address: (nil)
[pvfs2-compute-0-0:05448] *** Process received signal ***
[pvfs2-compute-0-0:05448] Signal: Segmentation fault (11)
[pvfs2-compute-0-0:05448] Signal code: Address not mapped (1)
[pvfs2-compute-0-0:05448] Failing at address: (nil)
[pvfs2-compute-0-0:05448] [ 0] /lib/tls/libpthread.so.0 [0xbb2890]
[pvfs2-compute-0-0:05448] [ 1] /opt/openmpi/lib/openmpi/
mca_bml_r2.so(mca_bml_r2_progress+0x39) [0x4b1d99]
[pvfs2-compute-0-0:05448] [ 2] /opt/openmpi/lib/libopen-pal.so.
0(opal_progress+0x65) [0x592265]
[pvfs2-compute-0-0:05448] [ 3] /opt/openmpi/lib/openmpi/
mca_oob_tcp.so(mca_oob_tcp_msg_wait+0x29) [0x20a731]
[pvfs2-compute-0-0:05448] [ 4] /opt/openmpi/lib/openmpi/
mca_oob_tcp.so(mca_oob_tcp_recv+0x365) [0x20f301]
[pvfs2-compute-0-0:05448] [ 5] /opt/openmpi/lib/libopen-rte.so.
0(mca_oob_recv_packed+0x38) [0x13c6a0]
[pvfs2-compute-0-0:05448] [ 6] /opt/openmpi/lib/libopen-rte.so.
0(mca_oob_xcast+0xa0e) [0x13d36a]
[pvfs2-compute-0-0:05448] [ 7] /opt/openmpi/lib/libmpi.so.
0(ompi_mpi_init+0x566) [0xda9f22]
[pvfs2-compute-0-0:05447] [ 0] /lib/tls/libpthread.so.0 [0xbb2890]
[pvfs2-compute-0-0:05447] [ 1] /opt/openmpi/lib/openmpi/
mca_bml_r2.so(mca_bml_r2_progress+0x39) [0x305d99]
[pvfs2-compute-0-0:05447] [ 2] /opt/openmpi/lib/libopen-pal.so.
0(opal_progress+0x65) [0x9fb265]
[pvfs2-compute-0-0:05447] [ 3] /opt/openmpi/lib/openmpi/
mca_oob_tcp.so(mca_oob_tcp_msg_wait+0x29) [0x2ed731]
[pvfs2-compute-0-0:05447] [ 4] /opt/openmpi/lib/openmpi/
mca_oob_tcp.so(mca_oob_tcp_recv+0x365) [0x2f2301]
[pvfs2-compute-0-0:05447] [ 5] /opt/openmpi/lib/libopen-rte.so.
0(mca_oob_recv_packed+0x38) [0x53c6a0]
[pvfs2-compute-0-0:05447] [ 6] /opt/openmpi/lib/openmpi/
mca_gpr_proxy.so(orte_gpr_proxy_put+0x1b0) [0x2c4fc8]
[pvfs2-compute-0-0:05447] [ 7] /opt/openmpi/lib/libopen-rte.so.
0(orte_smr_base_set_proc_state+0x244) [0x551420]
[pvfs2-compute-0-0:05447] [ 8] /opt/openmpi/lib/libmpi.so.
0(ompi_mpi_init+0x52e) [0x13ceea]
[pvfs2-compute-0-0:05447] [ 9] /opt/openmpi/lib/libmpi.so.
0(PMPI_Init_thread+0x5c) [0x15e844]
[pvfs2-compute-0-0:05447] [10] justhi(main+0x36) [0x8048782]
[pvfs2-compute-0-0:05448] [ 8] /opt/openmpi/lib/libmpi.so.
0(PMPI_Init_thread+0x5c) [0xdcb844]
[pvfs2-compute-0-0:05448] [ 9] justhi(main+0x36) [0x8048782]
[pvfs2-compute-0-0:05448] [10] /lib/tls/libc.so.6(__libc_start_main
+0xd3) [0x970de3]
[pvfs2-compute-0-0:05448] [11] justhi [0x80486c5]
[pvfs2-compute-0-0:05448] *** End of error message ***
[pvfs2-compute-0-0:05447] [11] /lib/tls/libc.so.6(__libc_start_main
+0xd3) [0x1a0de3]
[pvfs2-compute-0-0:05447] [12] justhi [0x80486c5]
[pvfs2-compute-0-0:05447] *** End of error message ***
[pvfs2-compute-0-0.local:05446] [0,0,1] orted_recv_pls: received
message from [0,0,0]
[pvfs2-compute-0-0.local:05446] [0,0,1] orted_recv_pls: received
kill_local_procs
[Ctrl+Z and kill -9 is needed to finish the execution]
The machinefile contains:
c0-0 slots=4
c0-1 slots=4
c0-2 slots=4
c0-3 slots=4
...
If processes are forced to be spawned in different nodes (c0-0
slots=1,
c0-1 slots=1, c0-2 slots=1, c0-3 slots=1...) then there is no
error :-?
With 1.2.3 version (same *configure* options) everything runs
perfectly.
The ompi_info for my openmpi 1.2.4 installation:
Open MPI: 1.2.4
Open MPI SVN revision: r16187
Open RTE: 1.2.4
Open RTE SVN revision: r16187
OPAL: 1.2.4
OPAL SVN revision: r16187
Prefix: /opt/openmpi
Configured architecture: i686-pc-linux-gnu
Configured by: root
Configured on: Sun Nov 25 20:13:42 CET 2007
Configure host: pvfs2-compute-0-0.local
Built by: root
Built on: Sun Nov 25 20:19:55 CET 2007
Built host: pvfs2-compute-0-0.local
C bindings: yes
C++ bindings: yes
Fortran77 bindings: no
Fortran90 bindings: no
Fortran90 bindings size: na
C compiler: gcc
C compiler absolute: /usr/bin/gcc
C++ compiler: g++
C++ compiler absolute: /usr/bin/g++
Fortran77 compiler: none
Fortran77 compiler abs: none
Fortran90 compiler: none
Fortran90 compiler abs: none
C profiling: yes
C++ profiling: yes
Fortran77 profiling: no
Fortran90 profiling: no
C++ exceptions: no
Thread support: posix (mpi: yes, progress: no)
Internal debug support: no
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
libltdl support: yes
Heterogeneous support: yes
mpirun default --prefix: no
MCA backtrace: execinfo (MCA v1.0, API v1.0, Component
v1.2.4)
MCA memory: ptmalloc2 (MCA v1.0, API v1.0, Component
v1.2.4)
MCA paffinity: linux (MCA v1.0, API v1.0, Component v1.2.4)
MCA maffinity: first_use (MCA v1.0, API v1.0, Component
v1.2.4)
MCA maffinity: libnuma (MCA v1.0, API v1.0, Component
v1.2.4)
MCA timer: linux (MCA v1.0, API v1.0, Component v1.2.4)
MCA installdirs: env (MCA v1.0, API v1.0, Component v1.2.4)
MCA installdirs: config (MCA v1.0, API v1.0, Component v1.2.4)
MCA allocator: basic (MCA v1.0, API v1.0, Component v1.0)
MCA allocator: bucket (MCA v1.0, API v1.0, Component v1.0)
MCA coll: basic (MCA v1.0, API v1.0, Component v1.2.4)
MCA coll: self (MCA v1.0, API v1.0, Component v1.2.4)
MCA coll: sm (MCA v1.0, API v1.0, Component v1.2.4)
MCA coll: tuned (MCA v1.0, API v1.0, Component v1.2.4)
MCA io: romio (MCA v1.0, API v1.0, Component v1.2.4)
MCA mpool: rdma (MCA v1.0, API v1.0, Component v1.2.4)
MCA mpool: sm (MCA v1.0, API v1.0, Component v1.2.4)
MCA pml: cm (MCA v1.0, API v1.0, Component v1.2.4)
MCA pml: ob1 (MCA v1.0, API v1.0, Component v1.2.4)
MCA bml: r2 (MCA v1.0, API v1.0, Component v1.2.4)
MCA rcache: vma (MCA v1.0, API v1.0, Component v1.2.4)
MCA btl: self (MCA v1.0, API v1.0.1, Component v1.2.4)
MCA btl: sm (MCA v1.0, API v1.0.1, Component v1.2.4)
MCA btl: tcp (MCA v1.0, API v1.0.1, Component v1.0)
MCA topo: unity (MCA v1.0, API v1.0, Component v1.2.4)
MCA osc: pt2pt (MCA v1.0, API v1.0, Component v1.2.4)
MCA errmgr: hnp (MCA v1.0, API v1.3, Component v1.2.4)
MCA errmgr: orted (MCA v1.0, API v1.3, Component v1.2.4)
MCA errmgr: proxy (MCA v1.0, API v1.3, Component v1.2.4)
MCA gpr: null (MCA v1.0, API v1.0, Component v1.2.4)
MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.2.4)
MCA gpr: replica (MCA v1.0, API v1.0, Component
v1.2.4)
MCA iof: proxy (MCA v1.0, API v1.0, Component v1.2.4)
MCA iof: svc (MCA v1.0, API v1.0, Component v1.2.4)
MCA ns: proxy (MCA v1.0, API v2.0, Component v1.2.4)
MCA ns: replica (MCA v1.0, API v2.0, Component
v1.2.4)
MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0)
MCA ras: dash_host (MCA v1.0, API v1.3, Component
v1.2.4)
MCA ras: gridengine (MCA v1.0, API v1.3, Component
v1.2.4)
MCA ras: localhost (MCA v1.0, API v1.3, Component
v1.2.4)
MCA ras: slurm (MCA v1.0, API v1.3, Component v1.2.4)
MCA rds: hostfile (MCA v1.0, API v1.3, Component
v1.2.4)
MCA rds: proxy (MCA v1.0, API v1.3, Component v1.2.4)
MCA rds: resfile (MCA v1.0, API v1.3, Component
v1.2.4)
MCA rmaps: round_robin (MCA v1.0, API v1.3, Component
v1.2.4)
MCA rmgr: proxy (MCA v1.0, API v2.0, Component v1.2.4)
MCA rmgr: urm (MCA v1.0, API v2.0, Component v1.2.4)
MCA rml: oob (MCA v1.0, API v1.0, Component v1.2.4)
MCA pls: gridengine (MCA v1.0, API v1.3, Component
v1.2.4)
MCA pls: proxy (MCA v1.0, API v1.3, Component v1.2.4)
MCA pls: rsh (MCA v1.0, API v1.3, Component v1.2.4)
MCA pls: slurm (MCA v1.0, API v1.3, Component v1.2.4)
MCA sds: env (MCA v1.0, API v1.0, Component v1.2.4)
MCA sds: pipe (MCA v1.0, API v1.0, Component v1.2.4)
MCA sds: seed (MCA v1.0, API v1.0, Component v1.2.4)
MCA sds: singleton (MCA v1.0, API v1.0, Component
v1.2.4)
MCA sds: slurm (MCA v1.0, API v1.0, Component v1.2.4)
and the naive program I'm testing:
$ cat justhi.c
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <mpi.h>
MPI_Status status;
int main( int argc, char *argv[] )
{
int myid, nprocs, threadlevel = 0;
MPI_Init_thread (&argc, &argv, MPI_THREAD_MULTIPLE, &threadlevel);
// MPI_Init (&argc, &argv);
MPI_Comm_rank (MPI_COMM_WORLD, &myid);
MPI_Comm_size (MPI_COMM_WORLD, &nprocs);
if (myid < 0)
MPI_Abort (MPI_COMM_WORLD, 1);
if (myid != 0) {
fprintf (stdout, "Hi, P%d ready sir!\n", myid);
} else {
fprintf (stdout, "\nWho rules here!! (%d procs - thread-level: %d)
\n\n", nprocs, threadlevel);
}
MPI_Finalize ();
return (0);
}
compiled with:
/opt/openmpi/bin/mpicc -Wall -o justhi justhi.c
Thanks in advance :-)
Emilio.
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