Thanks this is all interesting articles.
Brock Palen
Center for Advanced Computing
bro...@umich.edu
(734)936-1985
On Aug 17, 2007, at 3:13 PM, Jeff Squyres wrote:
On Aug 17, 2007, at 12:16 PM, Brock Palen wrote:
We have a user who uses the sepran1206 package. It works for him on
lam, mpich2 and OMPI up to problem sizes i see in the debugger (ddt)
that both rank 0 and rank 1 call PMPI_SEND()
Is PMPI_SEND the same as MPI_SEND?
For the most part, yes. In Open MPI on many operating systems, one
is a weak symbol for the other (so in a debugger, you might see your
app call PMPI_Send instead of MPI_Send). On other operating systems
where weak symbols are not supported (e.g., OS X), there are two
copies of the same C function, one named MPI_Send and the other named
PMPI_Send (ditto for Fortran).
The "PMPI" versions are what are called the profiling versions --
meaning that someone can write their own 3rd party library and
provide "MPI_<foo>" functions to intercept all the MPI calls. They
can then do process accounting, tracing, or whatever they want to do,
and then call the back-end "PMPI_<foo>" function to perform the
actual MPI functionality. See the "profiling" chapter of the MPI-1
spec if you care about the details.
also why would it work with lam and mpich2 ?
If we up the btl_sm_eager_limit it works, (obviously due to the
blocking nature of both calling MPI_SEND)
but I am confused as to why lam works and ompi does not.
A common reason for this kind of behavior is assuming that MPI_SEND
will not block. Check out an old magazine column that I wrote about
this topic:
http://cw.squyres.com/columns/2004-08-CW-MPI-Mechanic.pdf
It's "#1" on my top-10 list of evils to avoid in parallel (that
column is part 2 of 2 -- part 1 is http://cw.squyres.com/columns/
2004-07-CW-MPI-Mechanic.pdf). I also talk about the same problem
in this column under the "Debugging a Classic MPI Mistake" heading:
http://cw.squyres.com/columns/2005-01-CW-MPI-Mechanic.pdf
I'll likely be copying/moving the PDFs of these old columns to
www.open-mpi.org in the not-distant future.
BTW: I'm not saying that this is definitely the problem, but from
your description, it certainly could be.
--
Jeff Squyres
Cisco Systems
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