On Nov 21, 2006, at 1:27 PM, Brock Palen wrote:
I had sent a message two weeks ago about this problem and talked
with
jeff at SC06 about how it might not be a OMPI problem. But it
appears now working with myricom that it is a problem in both
lam-7.1.2 and openmpi-1.1.2/1.1.1. Basically the results from a
HPL
run are wrong, Also causes a large number of packets to be dropped
by the fabric.
This problem does not happen when using mpichgm. The number of
dropped packets does not go up. There is a ticket open with
myircom
on this. They are a member of the group working on OMPI but i sent
this out just to bring the list uptodate.
If you have any questions feel free to ask me. The details are in
the archive.
Brock Palen
Hi all,
I am looking into this at Myricom.
So far, I have compiled OMPI version 1.2b1 using the --with-gm=/
path/
to/gm flag. I have compiled HPCC (contains HPL) using OMPI's mpicc.
Trying to run hpcc fails with "Myrinet/GM on host fog33 was
unable to
find any NICs". See mpirun output below.
I run gm_board_info and it finds two NICs.
I run ompi_info and it has the gm btl (see ompi_info below).
I have tried using the --prefix flag to mpirun as well as setting
PATH and LD_LIBRARY_PATH.
What am I missing?
Scott
% ompi_info -param btl gm
MCA btl: parameter "btl_base_debug" (current
value:
"0")
If btl_base_debug is 1 standard debug is
output, if > 1 verbose debug
is output
MCA btl: parameter "btl" (current value: <none>)
Default selection set of components for
the btl framework (<none>
means "use all components that can be
found")
MCA btl: parameter "btl_base_verbose" (current
value: "0")
Verbosity level for the btl framework
(0 =
no verbosity)
MCA btl: parameter "btl_gm_free_list_num" (current
value: "8")
MCA btl: parameter "btl_gm_free_list_max" (current
value: "-1")
MCA btl: parameter "btl_gm_free_list_inc" (current
value: "8")
MCA btl: parameter "btl_gm_debug" (current
value: "0")
MCA btl: parameter "btl_gm_mpool" (current value:
"gm")
MCA btl: parameter "btl_gm_max_ports" (current
value: "16")
MCA btl: parameter "btl_gm_max_boards" (current
value: "4")
MCA btl: parameter "btl_gm_max_modules" (current
value: "4")
MCA btl: parameter
"btl_gm_num_high_priority" (current value: "8")
MCA btl: parameter "btl_gm_num_repost" (current
value: "4")
MCA btl: parameter "btl_gm_port_name" (current
value: "OMPI")
MCA btl: parameter "btl_gm_exclusivity" (current
value: "1024")
MCA btl: parameter "btl_gm_eager_limit" (current
value: "32768")
MCA btl: parameter "btl_gm_min_send_size" (current
value: "32768")
MCA btl: parameter "btl_gm_max_send_size" (current
value: "65536")
MCA btl: parameter "btl_gm_min_rdma_size" (current
value: "524288")
MCA btl: parameter "btl_gm_max_rdma_size" (current
value: "131072")
MCA btl: parameter "btl_gm_flags" (current value:
"50")
MCA btl: parameter "btl_gm_bandwidth" (current
value: "250")
MCA btl: parameter "btl_gm_priority" (current
value: "0")
MCA btl: parameter
"btl_base_warn_component_unused" (current value: "1")
This parameter is used to turn on warning
messages when certain NICs
are not used
% mpirun --prefix $OMPI -np 4 --host fog33,fog33,fog34,fog34 -mca
btl
self,sm,gm ./hpcc
--------------------------------------------------------------------
-
---
--
[0,1,1]: Myrinet/GM on host fog33 was unable to find any NICs.
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------
-
---
--
--------------------------------------------------------------------
-
---
--
[0,1,0]: Myrinet/GM on host fog33 was unable to find any NICs.
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------
-
---
--
--------------------------------------------------------------------
-
---
--
Process 0.1.3 is unable to reach 0.1.0 for MPI communication.
If you specified the use of a BTL component, you may have
forgotten a component (such as "self") in the list of
usable components.
--------------------------------------------------------------------
-
---
--
--------------------------------------------------------------------
-
---
--
Process 0.1.1 is unable to reach 0.1.2 for MPI communication.
If you specified the use of a BTL component, you may have
forgotten a component (such as "self") in the list of
usable components.
--------------------------------------------------------------------
-
---
--
--------------------------------------------------------------------
-
---
--
It looks like MPI_INIT failed for some reason; your parallel
process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or
environment
problems. This failure appears to be an internal failure; here's
some
additional information (which may only be relevant to an Open MPI
developer):
PML add procs failed
--> Returned "Unreachable" (-12) instead of "Success" (0)
--------------------------------------------------------------------
-
---
--
*** An error occurred in MPI_Init
*** before MPI was initialized
*** MPI_ERRORS_ARE_FATAL (goodbye)
% ls -l $OMPI
total 1
drwx------ 2 atchley softies 496 Nov 21 13:01 bin
drwx------ 2 atchley softies 168 Nov 21 13:01 etc
drwx------ 3 atchley softies 184 Nov 21 13:01 include
drwx------ 3 atchley softies 896 Nov 21 13:01 lib
drwx------ 4 atchley softies 96 Nov 21 13:01 man
drwx------ 3 atchley softies 72 Nov 21 13:00 share
% ls -l $OMPI/bin
total 340
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 mpiCC ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 mpic++ ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 mpicc ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 mpicxx ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 7 Nov 21 13:01 mpiexec -> orterun
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 mpif77 ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 mpif90 ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 7 Nov 21 13:01 mpirun -> orterun
-rwxr-xr-x 1 atchley softies 138416 Nov 21 13:01 ompi_info
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:00 opalCC ->
opal_wrapper
-rwxr-xr-x 1 atchley softies 24119 Nov 21 13:00 opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:00 opalc++ ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:00 opalcc ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 orteCC ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 ortec++ ->
opal_wrapper
lrwxrwxrwx 1 atchley softies 12 Nov 21 13:01 ortecc ->
opal_wrapper
-rwxr-xr-x 1 atchley softies 26536 Nov 21 13:01 orted
-rwxr-xr-x 1 atchley softies 154770 Nov 21 13:01 orterun
% ls -l $OMPI/lib
total 1741
-rwxr-xr-x 1 atchley softies 1045 Nov 21 13:01
libmca_common_sm.la
lrwxrwxrwx 1 atchley softies 25 Nov 21 13:01
libmca_common_sm.so
-> libmca_common_sm.so.0.0.0
lrwxrwxrwx 1 atchley softies 25 Nov 21 13:01
libmca_common_sm.so.
0 -> libmca_common_sm.so.0.0.0
-rwxr-xr-x 1 atchley softies 10074 Nov 21 13:01
libmca_common_sm.so.
0.0.0
-rwxr-xr-x 1 atchley softies 1100 Nov 21 13:01 libmpi.la
lrwxrwxrwx 1 atchley softies 15 Nov 21 13:01 libmpi.so ->
libmpi.so.0.0.0
lrwxrwxrwx 1 atchley softies 15 Nov 21 13:01 libmpi.so.0 ->
libmpi.so.0.0.0
-rwxr-xr-x 1 atchley softies 640672 Nov 21 13:01 libmpi.so.0.0.0
-rwxr-xr-x 1 atchley softies 1005 Nov 21 13:01 libmpi_cxx.la
lrwxrwxrwx 1 atchley softies 19 Nov 21 13:01 libmpi_cxx.so ->
libmpi_cxx.so.0.0.0
lrwxrwxrwx 1 atchley softies 19 Nov 21 13:01 libmpi_cxx.so.0 ->
libmpi_cxx.so.0.0.0
-rwxr-xr-x 1 atchley softies 142062 Nov 21 13:01 libmpi_cxx.so.
0.0.0
-rwxr-xr-x 1 atchley softies 1009 Nov 21 13:01 libmpi_f77.la
lrwxrwxrwx 1 atchley softies 19 Nov 21 13:01 libmpi_f77.so ->
libmpi_f77.so.0.0.0
lrwxrwxrwx 1 atchley softies 19 Nov 21 13:01 libmpi_f77.so.0 ->
libmpi_f77.so.0.0.0
-rwxr-xr-x 1 atchley softies 283394 Nov 21 13:01 libmpi_f77.so.
0.0.0
-rwxr-xr-x 1 atchley softies 996 Nov 21 13:00 libopal.la
lrwxrwxrwx 1 atchley softies 16 Nov 21 13:00 libopal.so ->
libopal.so.0.0.0
lrwxrwxrwx 1 atchley softies 16 Nov 21 13:00 libopal.so.0 ->
libopal.so.0.0.0
-rwxr-xr-x 1 atchley softies 285769 Nov 21 13:00 libopal.so.0.0.0
-rwxr-xr-x 1 atchley softies 1051 Nov 21 13:00 liborte.la
lrwxrwxrwx 1 atchley softies 16 Nov 21 13:00 liborte.so ->
liborte.so.0.0.0
lrwxrwxrwx 1 atchley softies 16 Nov 21 13:00 liborte.so.0 ->
liborte.so.0.0.0
-rwxr-xr-x 1 atchley softies 380223 Nov 21 13:00 liborte.so.0.0.0
drwx------ 2 atchley softies 4160 Nov 21 13:01 openmpi
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