Hi, there: How are you guys doing?
I got a seg fault at the beginning of the Aztec library
an application is using, please find the attached config.log.gz
and the following stack trace and ompi_info output:
The following stack trace repeats for each process:
====
Failing at addr:(nil)
Signal:11 info.si_errno:0(Success) si_code:128()
Failing at addr:(nil)
[0] func:pgeofe [0x606665]
[1] func:/lib64/tls/libpthread.so.0 [0x3f8460c420]
[2] func:pgeofe(MPI_Comm_size+0x4d) [0x549c5d]
[3] func:pgeofe(parallel_info+0x3e) [0x4fcffe]
[4] func:pgeofe(AZ_set_proc_config+0x34) [0x4e8594]
[5] func:pgeofe(MAIN__+0xb2) [0x44ba8a]
[6] func:pgeofe(main+0x32) [0x4420aa]
[7] func:/lib64/tls/libc.so.6(__libc_start_main+0xdb) [0x3f83b1c4bb]
[8] func:pgeofe [0x441fea]
*** End of error message ***
====
ompi_info output:
Open MPI: 1.1
Open MPI SVN revision: r10477
Open RTE: 1.1
Open RTE SVN revision: r10477
OPAL: 1.1
OPAL SVN revision: r10477
Prefix: /home/pewang/openmpi
Configured architecture: x86_64-unknown-linux-gnu
Configured by: pewang
Configured on: Thu Aug 3 14:22:22 EDT 2006
Configure host: bl-geol-karst.geology.indiana.edu
Built by: pewang
Built on: Thu Aug 3 14:34:17 EDT 2006
Built host: bl-geol-karst.geology.indiana.edu
C bindings: yes
C++ bindings: yes
Fortran77 bindings: yes (all)
Fortran90 bindings: yes
Fortran90 bindings size: small
C compiler: gcc
C compiler absolute: /usr/bin/gcc
C++ compiler: g++
C++ compiler absolute: /usr/bin/g++
Fortran77 compiler: ifort
Fortran77 compiler abs: /opt/intel/fce/9.0/bin/ifort
Fortran90 compiler: ifort
Fortran90 compiler abs: /opt/intel/fce/9.0/bin/ifort
C profiling: yes
C++ profiling: yes
Fortran77 profiling: yes
Fortran90 profiling: yes
C++ exceptions: no
Thread support: posix (mpi: yes, progress: no)
Internal debug support: no
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
libltdl support: yes
MCA memory: ptmalloc2 (MCA v1.0, API v1.0, Component v1.1)
MCA paffinity: linux (MCA v1.0, API v1.0, Component v1.1)
MCA maffinity: first_use (MCA v1.0, API v1.0, Component v1.1)
MCA maffinity: libnuma (MCA v1.0, API v1.0, Component v1.1)
MCA timer: linux (MCA v1.0, API v1.0, Component v1.1)
MCA allocator: basic (MCA v1.0, API v1.0, Component v1.0)
MCA allocator: bucket (MCA v1.0, API v1.0, Component v1.0)
MCA coll: basic (MCA v1.0, API v1.0, Component v1.1)
MCA coll: hierarch (MCA v1.0, API v1.0, Component v1.1)
MCA coll: self (MCA v1.0, API v1.0, Component v1.1)
MCA coll: sm (MCA v1.0, API v1.0, Component v1.1)
MCA coll: tuned (MCA v1.0, API v1.0, Component v1.1)
MCA mpool: sm (MCA v1.0, API v1.0, Component v1.1)
MCA pml: ob1 (MCA v1.0, API v1.0, Component v1.1)
MCA bml: r2 (MCA v1.0, API v1.0, Component v1.1)
MCA rcache: rb (MCA v1.0, API v1.0, Component v1.1)
MCA btl: self (MCA v1.0, API v1.0, Component v1.1)
MCA btl: sm (MCA v1.0, API v1.0, Component v1.1)
MCA btl: tcp (MCA v1.0, API v1.0, Component v1.0)
MCA topo: unity (MCA v1.0, API v1.0, Component v1.1)
MCA osc: pt2pt (MCA v1.0, API v1.0, Component v1.0)
MCA gpr: null (MCA v1.0, API v1.0, Component v1.1)
MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.1)
MCA gpr: replica (MCA v1.0, API v1.0, Component v1.1)
MCA iof: proxy (MCA v1.0, API v1.0, Component v1.1)
MCA iof: svc (MCA v1.0, API v1.0, Component v1.1)
MCA ns: proxy (MCA v1.0, API v1.0, Component v1.1)
MCA ns: replica (MCA v1.0, API v1.0, Component v1.1)
MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0)
MCA ras: dash_host (MCA v1.0, API v1.0, Component v1.1)
MCA ras: hostfile (MCA v1.0, API v1.0, Component v1.1)
MCA ras: localhost (MCA v1.0, API v1.0, Component v1.1)
MCA ras: slurm (MCA v1.0, API v1.0, Component v1.1)
MCA rds: hostfile (MCA v1.0, API v1.0, Component v1.1)
MCA rds: resfile (MCA v1.0, API v1.0, Component v1.1)
MCA rmaps: round_robin (MCA v1.0, API v1.0, Component v1.1)
MCA rmgr: proxy (MCA v1.0, API v1.0, Component v1.1)
MCA rmgr: urm (MCA v1.0, API v1.0, Component v1.1)
MCA rml: oob (MCA v1.0, API v1.0, Component v1.1)
MCA pls: fork (MCA v1.0, API v1.0, Component v1.1)
MCA pls: rsh (MCA v1.0, API v1.0, Component v1.1)
MCA pls: slurm (MCA v1.0, API v1.0, Component v1.1)
MCA sds: env (MCA v1.0, API v1.0, Component v1.1)
MCA sds: seed (MCA v1.0, API v1.0, Component v1.1)
MCA sds: singleton (MCA v1.0, API v1.0, Component v1.1)
MCA sds: pipe (MCA v1.0, API v1.0, Component v1.1)
MCA sds: slurm (MCA v1.0, API v1.0, Component v1.1)
Thanks,
Peng
===============================================
Peng Wang, HPC/RAC
UITS, Indiana University
(812)855-9916 http://www.indiana.edu/~rac/hpc
===============================================
config.log.gz
Description: config.log.gz
