The commit is quite simple. You can simply modify the ompi/mca/ptl/gm/
ptl_gm_component.c at line 249 and replace the PTHREAD_CANCELED with
0 and your problem will be solved. This fix was committed yesterday
it will be on the next 1.0.3 release, or you can grab it from the
nightly build section on our website.
There is another way, but this approach will completely disable the
GM support. You can specify --without-gm on the configure line.
Thanks,
george.
On May 25, 2006, at 12:58 PM, Brock Palen wrote:
Is there a way to disable pthreads when building with gm? i can
build with just tcp just fine.
Brock
On May 25, 2006, at 3:34 PM, George Bosilca wrote:
That's kind of funny ... Look like the PTHREAD_CANCEL was missing
from the pthread.h on most of the Linux distributions until the
beginning of 2002 (http://sourceware.org/ml/newlib/2002/
msg00538.html). And it look like it is still missing from the MAC OS
X 10.3.9 pthread.h (http://lists.apple.com/archives/darwin-
development/2004/Feb/msg00150.html). Anyway, we can remove it as the
ptl are not used in the 1.0.2 release.
Thanks,
george.
On May 24, 2006, at 5:10 PM, Brock Palen wrote:
Im getting the following error when trying to build OMPI on OSX
10.3.9 with myrinet support, the libs are in
/opt/gm/lib
Includes:
/opt/gm/include
Bellow is my configure line and the error:
./configure --prefix=/home/software/openmpi-1.0.2 --with-tm=/home/
software/torque-2.1.0p0 --with-gm=/opt/gm FC=/opt/ibmcmp/xlf/8.1/
bin/
xlf90 F77=/opt/ibmcmp/xlf/8.1/bin/xlf CPPFLAGS=-I/opt/gm/include
gcc -DHAVE_CONFIG_H -I. -I. -I../../../../include -I../../../../
include -I/opt/gm/include -I../../../../include -I../../../.. -
I../../../.. -I../../../../include -I../../../../opal -I../../../../
orte -I../../../../ompi -I/opt/gm/include -D_REENTRANT -O3 -
DNDEBUG -
fno-strict-aliasing -MT ptl_gm.lo -MD -MP -MF .deps/ptl_gm.Tpo -c
ptl_gm.c -fno-common -DPIC -o .libs/ptl_gm.o
gcc -DHAVE_CONFIG_H -I. -I. -I../../../../include -I../../../../
include -I/opt/gm/include -I../../../../include -I../../../.. -
I../../../.. -I../../../../include -I../../../../opal -I../../../../
orte -I../../../../ompi -I/opt/gm/include -D_REENTRANT -O3 -
DNDEBUG -
fno-strict-aliasing -MT ptl_gm_priv.lo -MD -MP -MF .deps/
ptl_gm_priv.Tpo -c ptl_gm_priv.c -fno-common -DPIC -o .libs/
ptl_gm_priv.o
ptl_gm_component.c: In function `mca_ptl_gm_thread_progress':
ptl_gm_component.c:249: error: `PTHREAD_CANCELED' undeclared (first
use in this function)
ptl_gm_component.c:249: error: (Each undeclared identifier is
reported only once
ptl_gm_component.c:249: error: for each function it appears in.)
make[4]: *** [ptl_gm_component.lo] Error 1
make[4]: *** Waiting for unfinished jobs....
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all-recursive] Error 1
Could this be related to the version of the gm package we have
installed? Any insight would be helpful.
Brock
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