> How to make of use of GNUPLOT in Linux for plotting graphs by taking input 
> from files? Data in one file represents X-axis and other file data represents 
> Y-axis. Can anyone help me out?

This is off topic for this list but:
it is not possible. You have first to merge file1 and file2 like this:
paste file1 file2 > merged
then you can plot what you want in gnuplot:
plot "merged" 1:2
Frédéric
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